View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_92 (Length: 225)
Name: NF3162_high_92
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_92 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30513696 - 30513904
Alignment:
| Q |
1 |
attacattaatttcactcaataaataattacatattaaaagtaaattgttaaaatgaatttcattagcattttaattagttttcggtttgatcatgtgct |
100 |
Q |
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| T |
30513696 |
attacattaattttactcaataaata-ttacatattaaaagtaaattgttaaaatgaatttcattagcattttaattagttttcggtttgatcatgtgct |
30513794 |
T |
|
| Q |
101 |
caaacaagaaccagaaaaaacaaacgacaaacaagagtatccaaaagtgaatgtacctttgaaaaaacacacaattttgagtttaaggagcctgccacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30513795 |
caaacaagaaccagaaaaaacaaacgacaaacaagagtatccaaaagtgaatgtacctttgaaaaaacacacaattttgagtttaaggagccagccacgt |
30513894 |
T |
|
| Q |
201 |
ttccatctct |
210 |
Q |
| |
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|||| ||||| |
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| T |
30513895 |
ttccgtctct |
30513904 |
T |
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