View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_high_93 (Length: 225)

Name: NF3162_high_93
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_high_93
NF3162_high_93
[»] chr4 (4 HSPs)
chr4 (13-208)||(24155147-24155342)
chr4 (89-157)||(19181430-19181498)
chr4 (36-81)||(29539278-29539322)
chr4 (126-166)||(34666430-34666470)
[»] chr8 (4 HSPs)
chr8 (21-191)||(11066479-11066649)
chr8 (65-162)||(7547882-7547979)
chr8 (38-164)||(40028845-40028970)
chr8 (78-156)||(38503848-38503926)
[»] chr7 (8 HSPs)
chr7 (32-167)||(39644924-39645058)
chr7 (32-190)||(45980418-45980574)
chr7 (87-164)||(41482435-41482512)
chr7 (53-148)||(47038533-47038628)
chr7 (40-162)||(10026462-10026583)
chr7 (87-167)||(24429710-24429790)
chr7 (105-157)||(2334019-2334071)
chr7 (87-162)||(23318953-23319028)
[»] chr2 (5 HSPs)
chr2 (36-164)||(18665183-18665310)
chr2 (36-167)||(7670397-7670527)
chr2 (36-118)||(38490264-38490343)
chr2 (87-205)||(40626451-40626569)
chr2 (40-157)||(16567679-16567795)
[»] chr1 (4 HSPs)
chr1 (65-157)||(50004889-50004981)
chr1 (36-138)||(45792643-45792744)
chr1 (87-167)||(26793777-26793857)
chr1 (126-167)||(19806810-19806851)
[»] chr6 (3 HSPs)
chr6 (87-196)||(8573803-8573912)
chr6 (87-167)||(8547450-8547530)
chr6 (88-167)||(129115-129194)
[»] chr5 (2 HSPs)
chr5 (56-113)||(13039789-13039846)
chr5 (56-118)||(13109778-13109840)
[»] chr3 (2 HSPs)
chr3 (40-139)||(44764039-44764137)
chr3 (95-159)||(48936324-48936388)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 24155342 - 24155147
Alignment:
Q  13 cagagagaaacatgagcgatgaaagagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaat 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  24155342 cagagagaaacatgagcgatgaaagagaggacaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaaggatgaaaat 24155243  T
Q  113 atcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctattaacataccaaacagaagattgaaacaggacatgatagtatt 208  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  24155242 atcaaatgctgagtaggataggattagaaatagctttaagttatcatttcctattgacatatcaaacaaaagattgaaacaggacatgatagtatt 24155147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 19181430 - 19181498
Alignment:
Q  89 ccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatc 157  Q
    ||||||||||||||| | |||||||  ||| |  |||||||||||||||| |||||||||||| |||||    
T  19181430 ccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatc 19181498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 29539322 - 29539278
Alignment:
Q  36 agagagggcaaaataagaatttttaatgttaatcatgataggataa 81  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||    
T  29539322 agagagggcaaaatgagaatttt-aatgctaatcatgataggataa 29539278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 34666470 - 34666430
Alignment:
Q  126 taggataggattaaaaataggtttaagttatcttttcctat 166  Q
    ||||||| ||||| |||||||||||||||||| ||||||||    
T  34666470 taggatatgattagaaataggtttaagttatcatttcctat 34666430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 11066649 - 11066479
Alignment:
Q  21 aacatgagcgatgaaa-gagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaat 119  Q
    |||||||||||||||  |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||| |||| ||||||||| ||||     
T  11066649 aacatgagcgatgaattgagatggcaaaataagaatttt-aatgttaatcatgataggataattctaacctaccaaaaattaaggataaaaataacaaag 11066551  T
Q  120 gccgagtaggataggattaaaaataggtttaagttatcttttcctattaacataccaaacagaagattgaaa 191  Q
    || |||||||||||||||| |||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  11066550 gctgagtaggataggattagaaataggtttaagttatcctttcctattgacacaccaaagagaagattgaaa 11066479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 7547979 - 7547882
Alignment:
Q  65 taatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttc 162  Q
    ||||||| ||||||||| ||| ||||||||||||||||| |||| ||||||||| |   ||| ||||||||| ||||||||||| || ||||| ||||    
T  7547979 taatcataataggataattctaacccaccaaaaactaaggataataatatcaaaggagaagtgggataggataaaaaataggttaaacttatcatttc 7547882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 40028970 - 40028845
Alignment:
Q  38 agagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggatt 137  Q
    ||||||||||||||||||| | |  | ||||||||||||||||| ||| |||||| |||  ||||| ||||||||| |||| |  |||||||||  ||||    
T  40028970 agagggcaaaataagaattct-agcgctaatcatgataggataattctaacccacaaaatcctaaggataaaaataacaaaggaggagtaggatgagatt 40028872  T
Q  138 aaaaataggtttaagttatcttttcct 164  Q
    | ||| ||||| |||||||| ||||||    
T  40028871 agaaaaaggttaaagttatcatttcct 40028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 38503848 - 38503926
Alignment:
Q  78 ataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttat 156  Q
    |||| ||| |||||||||||||||| |||||||||| |||| |  |||||||||||| ||| || |  |||||||||||    
T  38503848 ataattctaacccaccaaaaactaaaaataaaaataacaaagggtgagtaggatagggttagaagtgagtttaagttat 38503926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 39645058 - 39644924
Alignment:
Q  32 tgaaagagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggat 131  Q
    ||||||||||||||||||||||||||  | || ||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||| |  |||||||||    
T  39645058 tgaaagagagggcaaaataagaattta-agtgctaatcatgataggataattctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggat 39644960  T
Q  132 aggattaaaaataggtttaagttatcttttcctatt 167  Q
    ||||||| |||| ||||||||||||| ||| |||||    
T  39644959 aggattataaatgggtttaagttatccttttctatt 39644924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 45980418 - 45980574
Alignment:
Q  32 tgaaagagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggat 131  Q
    |||||||||||||||| |||||||||| | || ||||||||||||||||| ||| |||||||||||| |||| ||||||||| |||| | |||  | |||    
T  45980418 tgaaagagagggcaaattaagaatttt-agtgctaatcatgataggataattct-acccaccaaaaagtaaggataaaaataacaaaggacgaacaagat 45980515  T
Q  132 aggattaaaaataggtttaagttatcttttcctattaacataccaaacagaagattgaa 190  Q
    || |||||||||  |||||||||||||||| ||| | || |||||||||  ||||||||    
T  45980516 agaattaaaaatgagtttaagttatctttttctactgacgtaccaaacaacagattgaa 45980574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 41482435 - 41482512
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcct 164  Q
    ||||||||||||||||| ||||||||| |||| |  |||||||||| |||||||||||||||||||||||| ||||||    
T  41482435 acccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcct 41482512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 47038628 - 47038533
Alignment:
Q  53 aatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtt 148  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||||||  |||||| || |||| |  | ||| |||| ||||| |||||||||    
T  47038628 aatttttaatgctaatcatgataggataattctaacccaccaaaaactaaagataaaagtaacaaagggtgggtacgatatgattagaaataggtt 47038533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 10026583 - 10026462
Alignment:
Q  40 agggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaa 139  Q
    ||||||||||||||||| | | || ||||||| ||||||||| ||| | ||||||||||||||| |||| |||| |||| |  |||| ||||| |||||     
T  10026583 agggcaaaataagaattct-agtgctaatcataataggataattctaatccaccaaaaactaaggataagaataacaaaggaggagtgggatatgattag 10026485  T
Q  140 aaataggtttaagttatcttttc 162  Q
    ||||||||| || ||||| ||||    
T  10026484 aaataggttaaacttatcatttc 10026462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 24429790 - 24429710
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctatt 167  Q
    ||||||||||||||||| ||||||||| |||| |  ||||| |||||||||| |||||| ||||| ||||| ||| |||||    
T  24429790 acccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattttctatt 24429710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 2334019 - 2334071
Alignment:
Q  105 ataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatc 157  Q
    ||||||||| |||| |  || ||||||||||||||||||||||||||||||||    
T  2334019 ataaaaataacaaaaggtgaataggataggattaaaaataggtttaagttatc 2334071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 23318953 - 23319028
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttc 162  Q
    ||||| ||||||| ||| ||||||||  |||| ||  | |||||||||||||||||||||||||| ||||| ||||    
T  23318953 acccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttc 23319028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 18665310 - 18665183
Alignment:
Q  36 agagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggatagga 135  Q
    ||||||||||||||||| ||||| | || ||||||||||||||||| ||| |||||||||||| |||| |||||| || |||| |  ||||| ||||  |    
T  18665310 agagagggcaaaataaggatttt-agtgctaatcatgataggataattctaacccaccaaaaattaaggataaaattaacaaagggtgagtaagatatta 18665212  T
Q  136 ttaaaaataggtttaagttatcttttcct 164  Q
    ||| |||||||||||||||||| ||||||    
T  18665211 ttagaaataggtttaagttatcctttcct 18665183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 7670527 - 7670397
Alignment:
Q  36 agagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggatagga 135  Q
    ||||||||||||||||| ||| | |||| ||||||||||||||||| ||| |||||||||||| |||| |||| |||  |||| ||  | ||||||||||    
T  7670527 agagagggcaaaataaggattat-aatgctaatcatgataggataattctaacccaccaaaaattaaggataagaattacaaaagctcaataggatagga 7670429  T
Q  136 ttaaaaataggtttaagttatcttttcctatt 167  Q
    ||| ||| ||||| || ||||| ||| |||||    
T  7670428 ttagaaacaggttaaacttatcattttctatt 7670397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 38490264 - 38490343
Alignment:
Q  36 agagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaa 118  Q
    ||||||||||||||| ||  ||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||    
T  38490264 agagagggcaaaatagga--ttttagtgttaatcatgataggataattctaacccaccaaaaactaag-ataaaaataacaaa 38490343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 40626569 - 40626451
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctattaacataccaaacagaagat 186  Q
    |||||||||||  |||| |||||||||  ||| |  |||||||||||||||| |||||  ||||| ||||| |||||||||     ||||||||| ||||    
T  40626569 acccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgcaccaaacagcagat 40626470  T
Q  187 tgaaacaggacatgatagt 205  Q
    |||| || || ||||||||    
T  40626469 tgaatcaagatatgatagt 40626451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 16567679 - 16567795
Alignment:
Q  40 agggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaa 139  Q
    |||| |||||||||||| | | || ||||||| ||||||||| ||  ||||||||||||||| | |||| |||| |||| |  ||||  ||||||||||     
T  16567679 agggtaaaataagaattct-attgctaatcataataggataattccaacccaccaaaaactatggataagaataacaaaggaggagtgagataggattag 16567777  T
Q  140 aaataggtttaagttatc 157  Q
    ||||||||| || |||||    
T  16567778 aaataggttaaacttatc 16567795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 50004889 - 50004981
Alignment:
Q  65 taatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatc 157  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||| |  || ||||||||||||| |||||||||||| |||||    
T  50004889 taatcatgataggataattctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatc 50004981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 45792643 - 45792744
Alignment:
Q  36 agagagggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggatagga 135  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||||||||| |||| |||  |||| ||  | ||||||||||    
T  45792643 agagagggcaaaataagaattat-aatgctaatcatgataggataattctaacccaccaaaaactaaggataagaattacaaaggctcaataggatagga 45792741  T
Q  136 tta 138  Q
    |||    
T  45792742 tta 45792744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 26793857 - 26793777
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctatt 167  Q
    ||||||||||||||||||||||||||| |||| |  || ||||||||||||| ||||| |||||||||||| ||| |||||    
T  26793857 acccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctatt 26793777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 19806810 - 19806851
Alignment:
Q  126 taggataggattaaaaataggtttaagttatcttttcctatt 167  Q
    ||||||||||||| |||||||||||| ||||| |||||||||    
T  19806810 taggataggattagaaataggtttaatttatcctttcctatt 19806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 8573803 - 8573912
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctattaacataccaaacagaagat 186  Q
    ||||||||||||||||| ||||||||| |||| |  || || |||| ||||| |||||||||||||||||| ||||||||| |    |||||| || |||    
T  8573803 acccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcatttcctattgatgctccaaacggaggat 8573902  T
Q  187 tgaaacagga 196  Q
    ||||||||||    
T  8573903 tgaaacagga 8573912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 8547450 - 8547530
Alignment:
Q  87 acccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctatt 167  Q
    ||||||||||||||||| ||||||||| |||| |  || || |||| ||||| |||||||||||||||||| |||||||||    
T  8547450 acccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcctttcctatt 8547530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 129115 - 129194
Alignment:
Q  88 cccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatcttttcctatt 167  Q
    |||| ||||||||||  ||||||||| |||| |  || || |||||||||||||||  ||||||||||| ||||||||||    
T  129115 cccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttattttttcctatt 129194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 13039846 - 13039789
Alignment:
Q  56 ttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaata 113  Q
    |||||||| |||||||||||||| || ||| ||||||||||||||||| |||||||||    
T  13039846 ttttaatgctaatcatgataggaaaattctaacccaccaaaaactaaggataaaaata 13039789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 13109840 - 13109778
Alignment:
Q  56 ttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaa 118  Q
    |||||||| ||||||||||| || || ||| ||||||||||||||||| ||||||||| ||||    
T  13109840 ttttaatgctaatcatgatatgaaaattctaacccaccaaaaactaaggataaaaataacaaa 13109778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 44764039 - 44764137
Alignment:
Q  40 agggcaaaataagaatttttaatgttaatcatgataggataactctgacccaccaaaaactaagaataaaaatatcaaatgccgagtaggataggattaa 139  Q
    |||| |||||||||||||| |||  ||||||||||||||||| ||| | || |||||||||||| |||||||||  ||| |  | |||||||||||||||    
T  44764039 agggtaaaataagaatttt-aatactaatcatgataggataattctaatccgccaaaaactaaggataaaaataaaaaaaggtgggtaggataggattaa 44764137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 48936324 - 48936388
Alignment:
Q  95 aaaactaagaataaaaatatcaaatgccgagtaggataggattaaaaataggtttaagttatctt 159  Q
    ||||||||| ||||||||| |||| |   ||||||||||||||||||| |||||||| |||||||    
T  48936324 aaaactaaggataaaaataacaaaggagaagtaggataggattaaaaacaggtttaaattatctt 48936388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University