View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_94 (Length: 223)
Name: NF3162_high_94
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_94 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43908390 - 43908168
Alignment:
| Q |
1 |
caaagtcatcaacatcatctttctcttcatcaacaatcaactttttactgttcaattgtttagaagcaaaaacaaagaatctctcatcccttgagtggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908390 |
caaagtcatcaacatcatctttctcttcatcaacaatcaactttttactgttcaattgtttagaagcaaaaacaaagaatctctcatcccttgagtggct |
43908291 |
T |
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| Q |
101 |
tgtttcttgcacctttttatttttaataattccatgaccaacttgatcatctgcataataaagtagtgtcacatagttgaactagaagtgttgatctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908290 |
tgtttcttgcacctttttatttttaataattccatgaccaacttgatcatctgcataataaagtagtgtcacatagttgaactagaagtgttgatctgca |
43908191 |
T |
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| Q |
201 |
tttgaataatatcaattaccata |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43908190 |
tttgaataatatcaattaccata |
43908168 |
T |
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