View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_100 (Length: 209)
Name: NF3162_low_100
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 9821166 - 9821341
Alignment:
| Q |
19 |
accttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataagaagtcaactagtaaagtaaaatactaaaaaatgatg |
118 |
Q |
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| T |
9821166 |
accttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataagaagtcaactagtaaagtaaactactaaaaaatgatg |
9821265 |
T |
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| Q |
119 |
tcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatc |
194 |
Q |
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| T |
9821266 |
tcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatc |
9821341 |
T |
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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 38693682 - 38693599
Alignment:
| Q |
19 |
accttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataagaa-gtcaactagtaaagtaa |
101 |
Q |
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| T |
38693682 |
accttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataagaaggaaaactagtaaagtaa |
38693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 38875620 - 38875710
Alignment:
| Q |
104 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatc |
194 |
Q |
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| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatc |
38875710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 38875418 - 38875481
Alignment:
| Q |
19 |
accttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataagaag |
85 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38875418 |
acctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataagaag |
38875481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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