View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_13 (Length: 472)
Name: NF3162_low_13
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 3084665 - 3085119
Alignment:
| Q |
1 |
atgtaaaagttaaaacccaaaccaaataaacatcaatatggcctagctaacaaataacaatattacactatttttgggaccgactcccctgcaattaaga |
100 |
Q |
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| T |
3084665 |
atgtaaaagttaaaatccaaaccaaataaacatcaatatggcctagctaacaaataacaatattacactatttttgggaccgactctcctgcaattaaga |
3084764 |
T |
|
| Q |
101 |
aatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaa |
200 |
Q |
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| T |
3084765 |
aatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaa |
3084864 |
T |
|
| Q |
201 |
tttgtattttgttggagcatctgatcaaaatcatcatacaactaccaatgtcacgaatacatgaatacaagatcctaccatataccagaatctacattcc |
300 |
Q |
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| T |
3084865 |
tttgtattttgttggagcatctgatcaaaatcatcatacaactaccaacgtcacgaatacatgaatacaagatcgtatcatataccagaatctacattcc |
3084964 |
T |
|
| Q |
301 |
tatttttataagtataatgtttgatgaaacaaaattatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaag |
400 |
Q |
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| T |
3084965 |
tatttttataagtataatgtttgatgaaacaaaattatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaag |
3085064 |
T |
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| Q |
401 |
caaatgactctacaaggcatagcaaaagcaatagggaggatagaaagcctagacc |
455 |
Q |
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| T |
3085065 |
caaatgattctacaagccatagcaaaagcaatagggaggatagaaagcctagacc |
3085119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 3093845 - 3093965
Alignment:
| Q |
335 |
ttatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaatgactctacaaggcatagcaaaagcaatag |
434 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||||||| |
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| T |
3093845 |
ttatttttaatttgctcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatag |
3093944 |
T |
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| Q |
435 |
ggaggatagaaagcctagacc |
455 |
Q |
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| T |
3093945 |
agaggatggagagcctggacc |
3093965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 3093623 - 3093718
Alignment:
| Q |
80 |
ccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatatttt |
178 |
Q |
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| T |
3093623 |
ccgactcccctgcaattaaggaatccatgcattcatgcagtcggac---ggtagtcgtttgatcaaaattgaacaagtcatattcaatcgcgatatttt |
3093718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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