View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_14 (Length: 469)
Name: NF3162_low_14
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 47026034 - 47025596
Alignment:
| Q |
18 |
attaacgaagcggtaaatattatctatctaactattagcaactgttattnnnnnnnttttaaatgtgtgtttgatttattaaaaatgaaacatacgatat |
117 |
Q |
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| T |
47026034 |
attaacgaagcggtaaatatta---atttaactattagcaattgttattaaaaaaactttaaatgtgtgtttgatttattaaaaatgaaacacacgatat |
47025938 |
T |
|
| Q |
118 |
gacaactttagttgtaaaactgttcaaagacatgacaaaccgatcgacaagagaaagaaataaaaactaaaattcatgtctcttactaaaactacatcac |
217 |
Q |
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| T |
47025937 |
gacaactttagttgtaaaactattcaaagatatgacaaaccgatgaacaagagaaagaaacaaaaactgaaattcatgtctcttactaaacc-acatcac |
47025839 |
T |
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| Q |
218 |
aactttttatcataaatataaattcaaaaactaaaatagtcttttatctacaaaagatcgtataagacaaacaaaagttctaataaagtgtttgatctgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47025838 |
aactttttatcataaatataaattcaaaaactaaaatagtcttttatctacaaaagttcgtataagacaaacaagagttctaataaagtgtttgatctgc |
47025739 |
T |
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| Q |
318 |
ttaaaagagtggaaatctttgttagatgtgctagtcccatgaccttataacattgccactcttttaagcattgatatataggacgagacaactttgactc |
417 |
Q |
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|||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47025738 |
ttaaaagagtggcaatctttgttagatgggctagtcccaggaccttataatattgccactcttttaagcattgatatataggacgagacaactttgactc |
47025639 |
T |
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| Q |
418 |
tatcaagactaaacc-tacttgaagataactatttttcctttg |
459 |
Q |
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| T |
47025638 |
tatcaagactaaaccttacttgaagataactattttccctttg |
47025596 |
T |
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