View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3162_low_19 (Length: 443)
Name: NF3162_low_19
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_19 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 3777136 - 3777549
Alignment:
| Q |
19 |
gaagcaacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3777136 |
gaagcaacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaa |
3777235 |
T |
|
| Q |
119 |
atcaatggccagcagaataccacggtgtattgctgtgagctcggcaaacaatatatcagaacttgctgtaatgtatcccgagaaacctttaaggaataaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
3777236 |
atcaatggccagcagaataccacggtgtattgctgttagctcggcaaacaatatgtcagaacttgctgtaatatatccagagaaacctttaagaaataaa |
3777335 |
T |
|
| Q |
219 |
cctgcataatttcttatgattccaccaaaacctgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3777336 |
cctgcataatttcttatgattccaccaaaacccgctctaataggagttcccaagcagctacc-tcaacattaagcacaaaactgttaaaattgttttcat |
3777434 |
T |
|
| Q |
319 |
tccagcgtaccgtgcggccaggcgtagggattatttcagaatgcaatgcattttcaattgcttccaccgcatgttgaatttggtactggatgcgaacaag |
418 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
3777435 |
tccagcgtaccgtgcgaccaggcgtggggattacttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactgtatgcgaacaag |
3777534 |
T |
|
| Q |
419 |
agaccatggttcatc |
433 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3777535 |
agaccatggttcatc |
3777549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 19267476 - 19267063
Alignment:
| Q |
19 |
gaagcaacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19267476 |
gaagcaacacagcataggcatggtaagtgatggcatgcatagtgaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaa |
19267377 |
T |
|
| Q |
119 |
atcaatggccagcagaataccacggtgtattgctgtgagctcggcaaacaatatatcagaacttgctgtaatgtatcccgagaaacctttaaggaataaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
19267376 |
atcaatggccagcagaataccacggtgtattgctgtaagctcggcaaacaatatgtcagaacttgctgtaatatatccagagaaacctttaagaaataaa |
19267277 |
T |
|
| Q |
219 |
cctgcataatttcttatgattccaccaaaacctgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcat |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19267276 |
cttgcataatttcttatgattccaccaaaacccgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcat |
19267177 |
T |
|
| Q |
319 |
tccagcgtaccgtgcggccaggcgtagggattatttcagaatgcaatgcattttcaattgcttccaccgcatgttgaatttggtactggatgcgaacaag |
418 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
19267176 |
tccagcgtaccgtgcgaccaggcgtggtgattacttcagaatgcagtgcattttcaattgcttccaccgcatgttgaacttggaactggatgcgaacaag |
19267077 |
T |
|
| Q |
419 |
agaccatggttcat |
432 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19267076 |
agaccatggttcat |
19267063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 40330239 - 40329832
Alignment:
| Q |
19 |
gaagcaacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaa |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
40330239 |
gaagtaacacagcataggcatggtaagtggaggcgtgcac-gtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcgttaatacctaa |
40330141 |
T |
|
| Q |
119 |
atcaatggccagcagaataccacggtgtattgctgtgagctcggcaaacaatatatcagaacttgctgtaatgtatcccgagaaacctttaaggaataaa |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| || || |||||||||||||| |||||| |
|
|
| T |
40330140 |
atcaatggctagcagaataccacggtgtattgctgtaagctcggcaaacaatatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaa |
40330041 |
T |
|
| Q |
219 |
cctgcataatttcttatgattccaccaaaacctgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40330040 |
cctgcataatttcttatgattccaccaaaacccgctctaataggagttcccaatcagctaccgtcaacattgagcacaaaactgttaaaattgttttcat |
40329941 |
T |
|
| Q |
319 |
tccagcgtaccgtgcggccaggcgtagggattatttcagaatgcaatgcattttcaattgcttccaccgcatgttgaatttggtactggatgcgaacaag |
418 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
40329940 |
tccagcgtaccatgcgatcaggcgtggggattacttcagaatgcagcgcattttcaattgcttccaccgcattttgaatttggaactggatgcgaacaag |
40329841 |
T |
|
| Q |
419 |
agaccatgg |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
40329840 |
agaccatgg |
40329832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 35133306 - 35133714
Alignment:
| Q |
19 |
gaagcaacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaa |
118 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
35133306 |
gaagcaacacaacataggtatggtaagtggaggcgtgcacagtaaggagctgaattgagatcatggagtctgagtaacaaaccatttcgtcaatacctaa |
35133405 |
T |
|
| Q |
119 |
atcaatggccagcagaataccacggtgtattgctgtgagctcggcaaacaatatatcagaacttgctgtaatgtatcccgagaaacctttaaggaataaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||| || || |||||||||||||| |||||| |
|
|
| T |
35133406 |
atcaatggtcagcagaataccacggtgtattgctgtaagctcggcaaacaatatgtcataacttgttgtaatatagccagagaaacctttaagaaataaa |
35133505 |
T |
|
| Q |
219 |
cctgcataatttcttatgattccaccaaaacctgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35133506 |
cctgcataatttcttatgattccaccaaaacccgctctaataggagatcccaagcagctaccgtcaacattgagcacaaaactgttaaaattgttttcat |
35133605 |
T |
|
| Q |
319 |
tccagcgtaccgtgcggccaggcgtagggattatttcagaatgcaatgcattttcaattgcttccaccgcatgttgaatttggtactggatgcgaacaag |
418 |
Q |
| |
|
||||||||||| |||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
35133606 |
tccagcgtaccatgcgatcaggcgtggggataacttcagaatgcagcgcattttcaattgcttccaccacattttgaatttggaactggatgcgaacaag |
35133705 |
T |
|
| Q |
419 |
agaccatgg |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
35133706 |
agaccatgg |
35133714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 41985510 - 41985355
Alignment:
| Q |
24 |
aacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaaatcaa |
123 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
41985510 |
aacagagcataggcatggtaagtggaggcgtgcacaataaggagctgaatggagatcatggagtccgagtaacaaatcattttgttaatacctaaatcaa |
41985411 |
T |
|
| Q |
124 |
tggccagcagaataccacggtgtattgctgtgagctcggcaaacaatatatcagaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||| |
|
|
| T |
41985410 |
tggccagcagaataccacggtgtattgttgtaagctcgacaaacaatatgtcagaa |
41985355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 27 - 334
Target Start/End: Original strand, 22902082 - 22902395
Alignment:
| Q |
27 |
acagcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagat-----catggagtccgagtaacaaaccatttcttcaatacctaaatc |
121 |
Q |
| |
|
|||||||||| |||||| || ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| || |||| |
|
|
| T |
22902082 |
acagcataggtgtggtaaatggaggcatgctcagtgaggagctgaatggagaggagagcatggagtccgagtaacaaaccatttcgtcgatatctgaatc |
22902181 |
T |
|
| Q |
122 |
aatggccagcagaataccacggtgtattgctgtgagctcggcaaacaatatatcagaacttgctgtaatgtatcccgagaaacctttaaggaataaacct |
221 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||| || ||| |||||| || ||| || || |||||||||||||||||||||||| |
|
|
| T |
22902182 |
tatggccagcagaataccacggtggattgctgtaagctcggcaaacaaaatgtcaaaacttgttgaaatataaccagagaaacctttaaggaataaacct |
22902281 |
T |
|
| Q |
222 |
gcataatttcttatgattccaccaaaacctgctctaata-ggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcattc |
320 |
Q |
| |
|
||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||| ||||| ||| | |||||| |
|
|
| T |
22902282 |
gcagaatttctgatgattccaccaaaacccgctctaatagggagttcccaagcagctaccatcaacattgagcacaaaacaattaaagttgctgtcattc |
22902381 |
T |
|
| Q |
321 |
cagcgtaccgtgcg |
334 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
22902382 |
cagcgaaccatgcg |
22902395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 50 - 305
Target Start/End: Complemental strand, 79688 - 79433
Alignment:
| Q |
50 |
ggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaaatcaatggccagcagaataccacggtgtatt |
149 |
Q |
| |
|
||||||| || ||||||| | |||||||| |||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||| ||||||||| ||| |
|
|
| T |
79688 |
ggcatgctcattaaggagtttaatggagagcatggaatccgagtaacaaaccatttcgtcaatacctgaatttatggccagaagaagaccacggtggatt |
79589 |
T |
|
| Q |
150 |
gctgtgagctcggcaaacaatatatcagaacttgctgtaatgtatcccgagaaacctttaaggaataaacctgcataatttcttatgattccaccaaaac |
249 |
Q |
| |
|
|||| |||||||| ||||| || |||||| ||| || || || || ||||||| | | | |||||||||| || || | | |||||||||||||||| |
|
|
| T |
79588 |
gctgcaagctcggctaacaaaatgtcagaagttgttgcaagataaccggagaaacatgtgatgaataaacctacagaaatccggatgattccaccaaaac |
79489 |
T |
|
| Q |
250 |
ctgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgtta |
305 |
Q |
| |
|
| |||| |||||||||||||||||||||||| || ||||| |||||||||| |||| |
|
|
| T |
79488 |
cagctcgaataggagttcccaagcagctaccatccacattgagcacaaaacagtta |
79433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 47395732 - 47395839
Alignment:
| Q |
71 |
aatggagatcatggagtccgagtaacaaaccatttcttcaatacctaaatcaatggccagcagaataccacggtgtattgctgtgagctcggcaaacaat |
170 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||| ||||| ||| | || |||| ||| |||| |||| | || ||||| || |||||||||||||| |
|
|
| T |
47395732 |
aatggagagcatggaatatgagtaacaaaccatttcgtcaatgcctgattctatgggcagaagaagaccatgatggattgcagtaagctcggcaaacaaa |
47395831 |
T |
|
| Q |
171 |
atatcaga |
178 |
Q |
| |
|
|| ||||| |
|
|
| T |
47395832 |
atgtcaga |
47395839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 35601150 - 35601105
Alignment:
| Q |
132 |
agaataccacggtgtattgctgtgagctcggcaaacaatatatcag |
177 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
35601150 |
agaagaccacggtgaattgcggtgagctcggcaaacaaaatatcag |
35601105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University