View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_20 (Length: 435)
Name: NF3162_low_20
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 204 - 420
Target Start/End: Original strand, 40334487 - 40334696
Alignment:
| Q |
204 |
gattatgaatgtttctacggatacttgcttttattaaaggtagtgagcatgtgaactctcaagtctcaaccatttatgcattggataaattgtttcttat |
303 |
Q |
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| T |
40334487 |
gattatgaatgtttctacggatacttgcttttattaaaggtagtgagcatgtgaactctc-------aaccatttatgcattggataaattgtttcttat |
40334579 |
T |
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| Q |
304 |
ttgtaaagaaataattttcgaagcatatagattcaataaaataaaataaatcaaaggacattatttctatcctaatgcataaatgacaaagaattgagag |
403 |
Q |
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| T |
40334580 |
ttgtgaagaaataattttcgaagcatatagattcaataaaataaaataaatcaaaggacattatttctatcctaatgcataaatgacaaagaattgagag |
40334679 |
T |
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| Q |
404 |
tttctatcctaatgcat |
420 |
Q |
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| T |
40334680 |
tttctatcctaatgcat |
40334696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 40334320 - 40334501
Alignment:
| Q |
7 |
tccaagaatatttgataatatattttgttaggttttcgactttggatcaatttacgttttaatttaaattgatttcgatatcaacactctttcttttcct |
106 |
Q |
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| T |
40334320 |
tccaaaaatatttgataatatattttgttaggttttcgactttggatcaatttacgttttaatttaaattgatttcgatatcaacactctttcttttcct |
40334419 |
T |
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| Q |
107 |
aaattaggatgtaccgttaaagtttgatattaggcttggcttatccactaagcattacgttagagcagattatgaatgtttc |
188 |
Q |
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| T |
40334420 |
aaattaggatgtaccgttaaagtttgatattaggcttggcttatccactaagcattacgttagagcagattatgaatgtttc |
40334501 |
T |
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