View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_24 (Length: 412)
Name: NF3162_low_24
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 145 - 395
Target Start/End: Complemental strand, 11103306 - 11103056
Alignment:
| Q |
145 |
atcagccttgccacggattttaagaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaacaatagcaccact |
244 |
Q |
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| T |
11103306 |
atcagctttgccacggattttaggaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaataatagcaccact |
11103207 |
T |
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| Q |
245 |
aataaccttattatagattgagcctcacgagccatattttttccttcttttgggtcgtatgtgaaagtgggaaatttaattgtttggagagaagaagaga |
344 |
Q |
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| T |
11103206 |
aataaccttattatagattgagcctcatgagccatattttttccttcttttgggtcgtatgtgaaagtgggaaatttaattgtttggagagaagaagaga |
11103107 |
T |
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| Q |
345 |
caatttttcatatggatgaggaatattatgagccgaactttacatatttat |
395 |
Q |
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| T |
11103106 |
caatttttcatatggatgaggaatattatgagccgaactttacatatttat |
11103056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 11589753 - 11589592
Alignment:
| Q |
145 |
atcagccttgccacggattttaagaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaacaatagcaccact |
244 |
Q |
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| T |
11589753 |
atcagctttgccacggattttaggaaaccattttagattgaaagtatttgtgggcatcattatccaaatcataatacaacccagaaataatagcaccact |
11589654 |
T |
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| Q |
245 |
aataaccttattatagattgagcctcacgagccatattttttccttcttttgggtcgtatgt |
306 |
Q |
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| T |
11589653 |
aataaccttattatagattgagcctcacgattcatattttttccttcttttgggtcgtatgt |
11589592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 11103425 - 11103338
Alignment:
| Q |
57 |
tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcataatattggactaaaa |
142 |
Q |
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| T |
11103425 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatttgaataaaa |
11103338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 11589871 - 11589784
Alignment:
| Q |
57 |
tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcataatattggactaaaa |
142 |
Q |
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| T |
11589871 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatttgaataaaa |
11589784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 11589937 - 11589893
Alignment:
| Q |
16 |
attaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
60 |
Q |
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| T |
11589937 |
attaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
11589893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 11103491 - 11103450
Alignment:
| Q |
16 |
attaacaagactggaaaagtgtacatgaggatcgtttcacct |
57 |
Q |
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| T |
11103491 |
attaacaagactggaaaagtgtacatgaggatcgtttcacct |
11103450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 11115145 - 11115062
Alignment:
| Q |
182 |
ttgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaacaatagcaccactaataaccttattatagattga |
265 |
Q |
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| T |
11115145 |
ttgaaagtatatgtaggcatcattataaaaatgaaaattaaacccagaaacagtaacaccatcaataaccttattgtagattga |
11115062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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