View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_28 (Length: 382)
Name: NF3162_low_28
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 7498215 - 7498564
Alignment:
| Q |
17 |
cacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacattt |
116 |
Q |
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| T |
7498215 |
cacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacattt |
7498314 |
T |
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| Q |
117 |
gtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtttgaacaaaaattgcaggatccatcaa |
216 |
Q |
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| T |
7498315 |
gtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtt--aacaaaaattgcaggatccatcaa |
7498412 |
T |
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| Q |
217 |
ttggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaa |
316 |
Q |
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| T |
7498413 |
ttggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaa |
7498512 |
T |
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| Q |
317 |
acaataaatgtatagttggttccattttgagccaaaattgttgagtgatttt |
368 |
Q |
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| T |
7498513 |
acaatcaatgtatagttggttccattttgaggcaaaattgttgagtgatttt |
7498564 |
T |
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