View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_30 (Length: 377)
Name: NF3162_low_30
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 32685395 - 32685053
Alignment:
| Q |
27 |
attcaaaattagtacaaatgttggacataacgaaaataaacataatttatttgtatattgtggtcataattcaaaattagctgatgaatcctcaaatcac |
126 |
Q |
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| T |
32685395 |
attcaaaattagtacaaatgttggacataacgaaaataaacataatttatttgtatattgtggtcataattcaaaattagctgatgaatcctcaaatcac |
32685296 |
T |
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| Q |
127 |
-----atgattagtaaattttgttgaattatgtccattctagagataaataatgataatttagactatatcaaaccttgtggcttatattgaaaagaatg |
221 |
Q |
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| T |
32685295 |
atgacatgattagtaaactttgtagaattatgtccattctagagataaataatgataatttagactttatcaaaccttgtggcttatattgaaaagaatg |
32685196 |
T |
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| Q |
222 |
tca-cccatcaacattcatggcttatgtaattcatatatatgttcatttatggtcaaaaaagaaagacatgatcacataagttcgaaatgatactttgat |
320 |
Q |
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| T |
32685195 |
tcaccccatcaacattcatggcttatgtaattc--atatatgttcatttatgatcaaaaaagaaagacatgatcacataagttcgaaatgatactttgat |
32685098 |
T |
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| Q |
321 |
atttcc-ttttttggagggatgataattcaatagatgaaaatgtt |
364 |
Q |
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| T |
32685097 |
atttcctttttttggagggatgataattcaatagatgaaaatgtt |
32685053 |
T |
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