View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_31 (Length: 377)
Name: NF3162_low_31
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 32685760 - 32685396
Alignment:
| Q |
13 |
taggtcaattcacctaatccatatcaactttcttgattttcagccatgaaatttcaggtacacctaatgacctaaataaaaagaaattcatagctgtgtc |
112 |
Q |
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| T |
32685760 |
taggtcaattcacctaatccatatcaactttcttgattttcagccatgaaatttcaggtacacctaatgacctaaataaaaagaaattcatagctgtgtc |
32685661 |
T |
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| Q |
113 |
ctcataataatgtacgttattttagatatttatctaataaaaactatattagtgaaatagtcaacagccagtgaaattattattagctatttgttnnnnn |
212 |
Q |
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| T |
32685660 |
cacataataatgtacgttattttagatatttatctaataaaaactatattagtgaaatagtcaacagccagtgaaattattattagctatttgttaaaaa |
32685561 |
T |
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| Q |
213 |
nntggtaatagacttttcttttggctattctttagtacaagtgcataatttgtgctgaagtatataatctttttcaatacttttgattataaaacaaagt |
312 |
Q |
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| T |
32685560 |
aatggtaatagacttttcttttggctattctttagtacaagtgcataatttgtgctgaagtatataatctttttcaatacttttgattataaaacaaagt |
32685461 |
T |
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| Q |
313 |
ctggaagtcaagatcgtatttttaagattccttgtttataaatgttggtcatacgacaagaacac |
377 |
Q |
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| T |
32685460 |
ctggaagtcaagatcgtatatttaagattccttgtttataaatgttggtcatacgacaagaacac |
32685396 |
T |
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