View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_34 (Length: 364)
Name: NF3162_low_34
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 38593003 - 38593175
Alignment:
| Q |
62 |
ataaagccttgacatcttatactataaagataccaaaagataagaaaattccttgnnnnnnnnnnnngataaaaatttggatttggattttcctcaggtg |
161 |
Q |
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| T |
38593003 |
ataaagccttgacatcttatactataaagataccaaaagataagaaaattccttgaaaaaaaaaaa-gataaaaatttggatttggattttcctcaggtg |
38593101 |
T |
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| Q |
162 |
tgaaatttcgtatttgataaacatacctatattacatttacaccaac-ttttttaggagaatacaccatcttat |
234 |
Q |
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| T |
38593102 |
tgaaatttcgtatttgataagcatacctatattacatttacaccaactttttttaggagaatacaccatcttat |
38593175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 353
Target Start/End: Original strand, 38593499 - 38593620
Alignment:
| Q |
232 |
tattgaataacttacctagtaataaagtaaatttcttaagtcgtttcgattgtatcgaaatctcataaaatttgtctt-aaagtttcgtttctcaagatt |
330 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
38593499 |
tattgaataact-acctagtaataaagtaaattttttaagtcgtttaaattgtatcgaaatctcacaaaatttgtcttaaaagtttcgtttctcaagatt |
38593597 |
T |
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| Q |
331 |
ttatttgtctcgtcttcgttcat |
353 |
Q |
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| T |
38593598 |
taatttgtctcgtcttcgttcat |
38593620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 38592928 - 38592963
Alignment:
| Q |
17 |
aaagatgctaaatatacataaccttaacatcttata |
52 |
Q |
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| T |
38592928 |
aaagatgctaaatatacataaccttaacatcttata |
38592963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 3595883 - 3595842
Alignment:
| Q |
133 |
aaaatttggatttggattttcctcaggtgtgaaatttcgtat |
174 |
Q |
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| T |
3595883 |
aaaatttggatttggattttccacagttgtgaaatttcgtat |
3595842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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