View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_35 (Length: 362)
Name: NF3162_low_35
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 25043824 - 25044183
Alignment:
| Q |
19 |
atagactaactacacaacaatgaaaagaacttattgatatgtttaggagcagtgatttttgtcgctggaacca--------aagggggtctaatggttat |
110 |
Q |
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| T |
25043824 |
atagactaactacacatcaatgaaaagaacttattgatatgtttaggagcagtgatttgtgtcgctggaaccagtagctttaagggggtctaatggttat |
25043923 |
T |
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| Q |
111 |
ataaagattatgtgattatggtgcatggttatataaaggaactcacaaagtcacatgctttaacgaggatagtgtatataaagatttgaatcaaattcaa |
210 |
Q |
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| T |
25043924 |
ataaagattatgtgattatgctgcatggttatataaaggaactcacaaagtcgtatgctttaacgaggatagtgtatataaagatttgaatcaaattcaa |
25044023 |
T |
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| Q |
211 |
tataaaatatnnnnnnnnnnn---------tgacagaacaaaattcataaaacttaaaa-------ttgnnnnnnnnnnnnngctgaatacataaggaaa |
294 |
Q |
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| T |
25044024 |
tatgaaatataaaaaaaataaaaaaaaaaatgacagaacaaaattcataaaacttaaaattggtttttggtttttggtttttgctgaatacataaggaaa |
25044123 |
T |
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| Q |
295 |
attatacatttccataatccataaaataagtgtattcatggagtcttcaattagaataat |
354 |
Q |
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| T |
25044124 |
attatacatttccataatccataaaataagtgtattcatggagtcttcaattagaataat |
25044183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 28649464 - 28649647
Alignment:
| Q |
143 |
ataaaggaactcacaaagtcacatgctttaacgaggatagtgtatataaagatttgaatcaaattcaatataaaatatnnnnnnnnnnntgacagaacaa |
242 |
Q |
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| T |
28649464 |
ataaaggaactcacaaagtcgcatgctttgatgaggagagtgtatatataaatttgaatcatattcaatatgaaacat-----aaaaaatgacagaacaa |
28649558 |
T |
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| Q |
243 |
aattcataaaacttaaaattgnnnnnnnnnnnnngctgaatacataaggaaaattatacatttccataatccataaaataagtgtattcatggagtct |
340 |
Q |
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| T |
28649559 |
aattcataaaatttaaaattg---------ttttgctaaattcataaggaaaattatacatttccataatccatactataagcgaattcatggagtct |
28649647 |
T |
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