View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_36 (Length: 358)
Name: NF3162_low_36
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_36 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 5731 - 5399
Alignment:
| Q |
10 |
atcatcatgaaatgactgacttgttcaatctttgcaattggttcttacacaattgaaccaacatacttacttagttgattannnnnnnnnnnncatcaaa |
109 |
Q |
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| T |
5731 |
atcatcatgaaatgacttacttgttcaatctttgcaattggttcttacacaattgaaccaacatacttacttagttgattatttttcttttttcatcaaa |
5632 |
T |
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| Q |
110 |
cattggtttgtcgaaggtctaaacagatgcagaaagagttgtaggctaagatggttgaactatctacgtcctaacataaagagaggaaattttgctgagg |
209 |
Q |
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| T |
5631 |
cattggtttgttgaaggtctaaacagatgcagaaagagttgtaggctaagatggttgaactatctacgtcctaacataaagagaggaaattttgctgagg |
5532 |
T |
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| Q |
210 |
aggaagtggaaatgattgtcaaactccacaaattattaggcaacaggtaaactttgatctttaagactttcctttggtattttctaatgtgttctaagtt |
309 |
Q |
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| T |
5531 |
aggaagtggaaatgattgtcaaactccacaaattattaggcaacaggtaaactttgatctttaagactttcctttggtattttctaatgtgttctaagtt |
5432 |
T |
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| Q |
310 |
ctaacaactaggcatgggccatgatagccttat |
342 |
Q |
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| T |
5431 |
ctaacaactaggcatgggccatgatagccttat |
5399 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 41544284 - 41544317
Alignment:
| Q |
141 |
gaaagagttgtaggctaagatggttgaactatct |
174 |
Q |
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| T |
41544284 |
gaaagagttgcaggctaagatggttgaactatct |
41544317 |
T |
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