View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_39 (Length: 352)
Name: NF3162_low_39
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 204 - 341
Target Start/End: Original strand, 38582922 - 38583059
Alignment:
| Q |
204 |
gactactttcatcatctgggaatatttgaagtcaatttcacatacaagaagctttaaaatgcttcatggtaaaaaagaatttgggtagataaggtaacta |
303 |
Q |
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| T |
38582922 |
gactactttcatcatctgggaatatttgaagtcaatttcacatacaagaagctttaaaatgcttcatggtaaaaaagaatttgggtagataaggtaacta |
38583021 |
T |
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| Q |
304 |
gcgttcatctacaagattaatttcacctaataattcat |
341 |
Q |
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| T |
38583022 |
gcgttaatctacaaggttcgtttcacccaatgattcat |
38583059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 38582721 - 38582860
Alignment:
| Q |
1 |
agacataagtttttgatatctctgattctcatatgttagtgcaactctatatctacatctacaatcaatgttccattcnnnnnnnttaaaatccataatc |
100 |
Q |
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| T |
38582721 |
agacataagtttttgatatctctgattctcatatgttagtgcaactatatatctacatctataatcaatgttccattcaaaaaaattaaaatccataatc |
38582820 |
T |
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| Q |
101 |
aattttaaaagcttgccttgcggag-aaaaaatcaagatg |
139 |
Q |
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| T |
38582821 |
aattttaaaagcttgccttgcggagaaaaaaatcaagatg |
38582860 |
T |
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