View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_40 (Length: 349)
Name: NF3162_low_40
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 75 - 333
Target Start/End: Original strand, 1836270 - 1836528
Alignment:
| Q |
75 |
tatcccctccttgctgatctaagatttccaaataaaaccttaattatatgagattccacgaatttgaattagtggtattctaaaatcccatgacacctaa |
174 |
Q |
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| T |
1836270 |
tatcccctccttgctgatcaaagatttccaaataaaaccttaattatatgagattccacgaatttggattagtggtattctaaaatcccatgacacctaa |
1836369 |
T |
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| Q |
175 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
274 |
Q |
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| T |
1836370 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
1836469 |
T |
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| Q |
275 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattaccatgctcttaatt |
333 |
Q |
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| T |
1836470 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattaccatgctcttaatt |
1836528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 1836174 - 1836240
Alignment:
| Q |
10 |
aagaaaatctagggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
76 |
Q |
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| T |
1836174 |
aagaaaatctagggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
1836240 |
T |
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