View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_43 (Length: 330)
Name: NF3162_low_43
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 37491495 - 37491798
Alignment:
| Q |
20 |
ggatacactctaataacataatccatatgttcaagacgtcgatatgtaatgtaagtatgagacattttgttccttacaaaccaattgaaatgatttagct |
119 |
Q |
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| T |
37491495 |
ggatacactctgataacataatccatatgttcaagacgtcgatatgtaatgtaagtatgagacattttgttccttacaaaccaattgaaatgatttagct |
37491594 |
T |
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| Q |
120 |
a--agttacagctcaaattctaaaaaaggtctctgtaccccaaaaaagaaaggagatatataaaatgaaactgattttcgatgtgtcagcctccagaatc |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37491595 |
ataagttacagctcaaattctaaaaaaggtctctgtaccccaaaaaagaaaggagatatataaaatgaaactgattttccatgtgtcagcctccagaatc |
37491694 |
T |
|
| Q |
218 |
agacaa---tgtatgcgaaaggaaagcggagcaacaagccagactagaaagctttccacattattatttttagcctccagaaaaaacgctatatatgtcc |
314 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491695 |
agacaatattgtatgcgaaaggaaagcggagcaacaagccagactagaaagctttccacattattatttttagcctccagaaaaaacgctatatatgtcc |
37491794 |
T |
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| Q |
315 |
ccta |
318 |
Q |
| |
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|||| |
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| T |
37491795 |
ccta |
37491798 |
T |
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