View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_45 (Length: 313)
Name: NF3162_low_45
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_45 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 37498181 - 37497871
Alignment:
| Q |
3 |
aatcataggcttgggggaattgaagcaagagttgaatgatactggagacaacaacaaaagggtaggagtaagcaagtattctttgttggtaggaaaattg |
102 |
Q |
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| T |
37498181 |
aatcataggcttgggggaattgaagcaagagttgaatgatactggagacaacaacaaaagggtaggagtaagcaagtattctttgttggtaggaaaattg |
37498082 |
T |
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| Q |
103 |
tcattattattctttcattctttactgcggataagatttactacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagt |
202 |
Q |
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| T |
37498081 |
tcattattattctttcattctttaatgcggataagatttactacttcaaagagatttgtattaatacaccaatattactttctgttcttaattttatagt |
37497982 |
T |
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| Q |
203 |
caagatttctagatatacatttagagataaattttgcttgattatttcgttctttatgtattcattttcaagttcttgtactatttatagttgaaggtga |
302 |
Q |
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| T |
37497981 |
caagatttctagatatacatttgaagataaattttgcttgattatttcattctttttgtattcattttcaagtttttgtactatttatatttgaaggtga |
37497882 |
T |
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| Q |
303 |
aatgaaattct |
313 |
Q |
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| T |
37497881 |
aatgaaattct |
37497871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 37497855 - 37497807
Alignment:
| Q |
265 |
cattttcaagttcttgtactatttatagttgaaggtgaaatgaaattct |
313 |
Q |
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| T |
37497855 |
cattctcaagtccttgtactatttatagttgaaggtgaaatgaaattct |
37497807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 312
Target Start/End: Complemental strand, 42601979 - 42601712
Alignment:
| Q |
58 |
aaaagggtaggagtaagcaagt--attctttgttggtaggaaaattgtcattattattctttcattctttactgcggataagatttactacttcaaagag |
155 |
Q |
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| T |
42601979 |
aaaagggtaggagtcagcaagggaattctttgttggtagaaaaattgtcattattattctttcattctttattgcagataagatttactagttcaaaggg |
42601880 |
T |
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| Q |
156 |
---------------atttgtattaatacaccaatattactttctgttcttaattttat-----agtcaagatttctagatatacatttagagataaatt |
235 |
Q |
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| T |
42601879 |
tagttagtgcaatttatttgtattaatacatcaatat---tttctgttcttaattttatagtcaagtcaagatttccagatatacatttgaagtcaaatt |
42601783 |
T |
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| Q |
236 |
ttgcttgattatttcgttctttatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattc |
312 |
Q |
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| T |
42601782 |
ctgcttcactatttcattttttatgtattcattatcaagtcgttgtactat------ttgaaggtgaaatgaaattc |
42601712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 313
Target Start/End: Complemental strand, 31321833 - 31321679
Alignment:
| Q |
158 |
ttgtattaatacaccaatattactttc-tgttcttaattttatagtcaagatttctagatatacatttagagataaattttgcttgattatttcgttctt |
256 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||| || | || ||||| |||||| | ||||| |
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| T |
31321833 |
ttgtattaatacatcaatattacttttatgttcttaattttatagtcaagatttc-atatatacatttgaagtccatttctgcttcattatt-cattctt |
31321736 |
T |
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| Q |
257 |
tatgtattcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattct |
313 |
Q |
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| T |
31321735 |
tatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattct |
31321679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 31321673 - 31321622
Alignment:
| Q |
262 |
attcattttcaagttcttgtactatttatagttgaaggtgaaatgaaattct |
313 |
Q |
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| T |
31321673 |
attcattctcaagtccttgtactatctgtagttgaaggtgaaatgacattct |
31321622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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