View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_50 (Length: 293)
Name: NF3162_low_50
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 101 - 291
Target Start/End: Complemental strand, 8264535 - 8264361
Alignment:
| Q |
101 |
aaccgatggacaatcaaattgtaacattataattttcccctcaacactatcatacgggtaaaatatagtatacaaagtccataacatgtttcctcnnnnn |
200 |
Q |
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| T |
8264535 |
aaccgatggacaatcaaattgtaatattataattttcccctcaaa------------gtaaaatatagtatacaaagtccataacatgtttcctcaaaaa |
8264448 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnngtccataacatgtttgaaggcacattcttatagggttgtggaggacatggtggggtgatatgaagttaacaactta |
291 |
Q |
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| T |
8264447 |
aaaaaaaaaaa----gtccataacatgtttgaaggcacattcttatagggttgtggaggacatggtggggtgatatgaagttaacaactta |
8264361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 8265746 - 8265701
Alignment:
| Q |
12 |
atgaaggtcaatttgaaaggaaaacatgttgataaacatcaccccc |
57 |
Q |
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| T |
8265746 |
atgaaggtcaatttgaaaggaaaacatgttgataaacattaccccc |
8265701 |
T |
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