View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_54 (Length: 287)
Name: NF3162_low_54
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 38582484 - 38582744
Alignment:
| Q |
17 |
attttgaactttgaagtagggaaatccacacttaaatcacagatttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaacta |
116 |
Q |
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| T |
38582484 |
attttgaactttgaagtagggaaatccacacttaaatcacagatttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaacta |
38582583 |
T |
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| Q |
117 |
tcacttgtaaatatatagttttggaagttatgagagtgtgaggggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582584 |
tcacttgtaaatatatagttttggaagttatgagagtgtgaggggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcacc |
38582683 |
T |
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| Q |
217 |
aaaaacagatgcttagtatatttaccttaccttatgcagacataagtttttgatatctctg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582684 |
aaaaacagatgcttagtatatttaccttaccttatgcagacataagtttttgatatctctg |
38582744 |
T |
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