View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_low_56 (Length: 286)

Name: NF3162_low_56
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_low_56
NF3162_low_56
[»] chr6 (28 HSPs)
chr6 (6-286)||(19748545-19748825)
chr6 (144-282)||(7223731-7223869)
chr6 (144-286)||(17103407-17103549)
chr6 (144-286)||(22498215-22498357)
chr6 (144-286)||(7918125-7918267)
chr6 (144-286)||(11327337-11327479)
chr6 (144-286)||(17543505-17543647)
chr6 (144-286)||(3573674-3573817)
chr6 (147-286)||(26053074-26053213)
chr6 (147-286)||(26073127-26073266)
chr6 (151-286)||(15527892-15528027)
chr6 (144-286)||(27233074-27233216)
chr6 (147-275)||(27614434-27614562)
chr6 (148-286)||(23898023-23898160)
chr6 (149-263)||(31108390-31108504)
chr6 (144-263)||(27890621-27890740)
chr6 (143-282)||(30912180-30912319)
chr6 (144-286)||(17250268-17250411)
chr6 (169-286)||(2912061-2912178)
chr6 (144-231)||(21354942-21355029)
chr6 (205-286)||(4841665-4841746)
chr6 (205-254)||(8275366-8275415)
chr6 (241-286)||(10508889-10508934)
chr6 (147-238)||(23506102-23506193)
chr6 (147-260)||(33583444-33583557)
chr6 (183-262)||(20432407-20432486)
chr6 (185-224)||(27890582-27890621)
chr6 (148-263)||(33592930-33593044)
[»] chr7 (41 HSPs)
chr7 (143-286)||(17811560-17811703)
chr7 (143-286)||(24989548-24989690)
chr7 (151-286)||(27221626-27221762)
chr7 (142-286)||(44944618-44944762)
chr7 (143-286)||(5715497-5715636)
chr7 (143-286)||(5058741-5058883)
chr7 (144-286)||(11326495-11326637)
chr7 (145-286)||(9685070-9685211)
chr7 (148-286)||(4247568-4247706)
chr7 (146-263)||(8304321-8304438)
chr7 (146-286)||(20570662-20570802)
chr7 (204-286)||(24725307-24725389)
chr7 (144-286)||(39182368-39182510)
chr7 (144-286)||(14055469-14055610)
chr7 (144-286)||(14365497-14365638)
chr7 (170-286)||(7730160-7730276)
chr7 (144-263)||(25842506-25842625)
chr7 (169-286)||(1977761-1977877)
chr7 (170-286)||(21846248-21846364)
chr7 (144-266)||(22687042-22687164)
chr7 (201-286)||(8329876-8329961)
chr7 (145-263)||(4574965-4575083)
chr7 (204-286)||(8329814-8329896)
chr7 (143-257)||(23618203-23618317)
chr7 (144-225)||(10285678-10285759)
chr7 (201-286)||(26565380-26565465)
chr7 (144-263)||(1981100-1981217)
chr7 (169-284)||(8343602-8343717)
chr7 (213-280)||(27509256-27509323)
chr7 (144-286)||(8572350-8572490)
chr7 (143-232)||(26281164-26281251)
chr7 (147-286)||(8346244-8346383)
chr7 (201-282)||(8346363-8346444)
chr7 (168-284)||(30294460-30294575)
chr7 (144-286)||(26617252-26617394)
chr7 (147-256)||(17741886-17741997)
chr7 (208-286)||(6916991-6917068)
chr7 (144-286)||(11325191-11325332)
chr7 (201-263)||(21157525-21157587)
chr7 (208-260)||(26340212-26340263)
chr7 (153-263)||(8629512-8629622)
[»] chr4 (29 HSPs)
chr4 (144-286)||(9770324-9770466)
chr4 (145-286)||(23064737-23064878)
chr4 (142-286)||(36121035-36121179)
chr4 (144-286)||(5375877-5376019)
chr4 (143-286)||(9911185-9911328)
chr4 (145-286)||(13551448-13551589)
chr4 (144-286)||(6346730-6346872)
chr4 (144-286)||(8010915-8011053)
chr4 (144-260)||(55476226-55476342)
chr4 (164-284)||(5361760-5361880)
chr4 (153-276)||(13023780-13023903)
chr4 (169-286)||(37240450-37240568)
chr4 (201-286)||(10143112-10143197)
chr4 (144-286)||(24719787-24719922)
chr4 (154-276)||(5943044-5943166)
chr4 (144-286)||(7045154-7045298)
chr4 (187-284)||(10394824-10394921)
chr4 (144-266)||(18459406-18459528)
chr4 (142-286)||(17466291-17466435)
chr4 (204-286)||(7044975-7045057)
chr4 (189-263)||(8367437-8367511)
chr4 (144-286)||(8889438-8889570)
chr4 (144-273)||(7452731-7452859)
chr4 (144-262)||(8743540-8743658)
chr4 (203-286)||(9149556-9149640)
chr4 (203-256)||(4157269-4157322)
chr4 (203-256)||(4157556-4157609)
chr4 (204-279)||(8931441-8931516)
chr4 (218-263)||(5884129-5884174)
[»] chr3 (38 HSPs)
chr3 (144-286)||(28745988-28746130)
chr3 (143-286)||(24619971-24620114)
chr3 (147-286)||(39428115-39428258)
chr3 (144-263)||(8592174-8592293)
chr3 (143-286)||(17064519-17064662)
chr3 (144-286)||(29067489-29067630)
chr3 (189-286)||(20756234-20756331)
chr3 (144-286)||(3449085-3449227)
chr3 (144-286)||(25870097-25870239)
chr3 (144-261)||(20766676-20766793)
chr3 (151-263)||(3041458-3041570)
chr3 (143-286)||(22355840-22355979)
chr3 (144-263)||(8560232-8560351)
chr3 (147-286)||(22137489-22137628)
chr3 (144-263)||(22971044-22971162)
chr3 (142-263)||(18014226-18014347)
chr3 (144-275)||(10872490-10872621)
chr3 (147-286)||(27676648-27676787)
chr3 (144-251)||(41671426-41671533)
chr3 (144-286)||(13286156-13286298)
chr3 (145-286)||(17796779-17796918)
chr3 (145-286)||(19105219-19105358)
chr3 (144-286)||(42697060-42697201)
chr3 (144-286)||(27090648-27090796)
chr3 (187-286)||(6136387-6136486)
chr3 (144-286)||(9152761-9152901)
chr3 (201-286)||(28135974-28136059)
chr3 (204-283)||(8155964-8156043)
chr3 (145-263)||(19348788-19348906)
chr3 (142-263)||(27055328-27055449)
chr3 (144-208)||(24649524-24649588)
chr3 (151-286)||(21963643-21963778)
chr3 (151-286)||(21986079-21986214)
chr3 (147-263)||(21553671-21553786)
chr3 (144-274)||(15515033-15515163)
chr3 (148-234)||(13006089-13006174)
chr3 (147-224)||(30727636-30727714)
chr3 (144-196)||(6860986-6861038)
[»] chr5 (26 HSPs)
chr5 (145-286)||(18843927-18844068)
chr5 (144-286)||(41688441-41688583)
chr5 (143-286)||(20321155-20321298)
chr5 (144-286)||(43235080-43235222)
chr5 (144-286)||(19579155-19579298)
chr5 (147-284)||(19042206-19042343)
chr5 (143-286)||(27339961-27340104)
chr5 (144-263)||(41427654-41427773)
chr5 (144-286)||(18051308-18051450)
chr5 (144-253)||(15051872-15051981)
chr5 (206-286)||(23172265-23172345)
chr5 (144-286)||(22645502-22645638)
chr5 (143-286)||(43005633-43005776)
chr5 (144-260)||(19377841-19377957)
chr5 (144-220)||(6852341-6852417)
chr5 (206-286)||(38158101-38158181)
chr5 (211-263)||(22984643-22984695)
chr5 (201-286)||(21058988-21059074)
chr5 (147-262)||(17624837-17624945)
chr5 (172-260)||(24648247-24648335)
chr5 (141-280)||(26021537-26021668)
chr5 (144-192)||(23172219-23172267)
chr5 (147-195)||(29270326-29270374)
chr5 (218-260)||(30799635-30799677)
chr5 (142-195)||(19979871-19979924)
chr5 (219-263)||(30804169-30804213)
[»] chr1 (33 HSPs)
chr1 (145-286)||(21846050-21846191)
chr1 (143-283)||(14074257-14074397)
chr1 (146-286)||(16125232-16125372)
chr1 (144-286)||(9351838-9351980)
chr1 (144-286)||(23528868-23529010)
chr1 (144-286)||(13100402-13100544)
chr1 (161-286)||(19009740-19009865)
chr1 (144-286)||(25146543-25146686)
chr1 (144-286)||(18304593-18304728)
chr1 (152-283)||(9954816-9954947)
chr1 (144-286)||(17055695-17055836)
chr1 (148-286)||(17869529-17869667)
chr1 (144-286)||(41032548-41032690)
chr1 (146-286)||(32881532-32881672)
chr1 (146-263)||(17197306-17197423)
chr1 (144-284)||(30619156-30619294)
chr1 (178-286)||(9128647-9128755)
chr1 (146-261)||(12002638-12002751)
chr1 (148-286)||(13276038-13276183)
chr1 (150-261)||(8773505-8773613)
chr1 (146-266)||(47786090-47786209)
chr1 (144-286)||(12513490-12513625)
chr1 (144-238)||(27502130-27502224)
chr1 (148-260)||(16434747-16434859)
chr1 (144-286)||(42179846-42179981)
chr1 (144-195)||(9954771-9954822)
chr1 (164-233)||(9321530-9321599)
chr1 (175-263)||(39845061-39845149)
chr1 (229-283)||(18228479-18228533)
chr1 (201-260)||(21242859-21242918)
chr1 (201-260)||(22789421-22789480)
chr1 (229-286)||(27917232-27917289)
chr1 (182-222)||(12002750-12002790)
[»] chr8 (28 HSPs)
chr8 (143-286)||(45403242-45403384)
chr8 (144-286)||(7489058-7489200)
chr8 (146-281)||(5922265-5922400)
chr8 (144-286)||(23142386-23142528)
chr8 (143-284)||(24414061-24414202)
chr8 (144-286)||(11879812-11879954)
chr8 (144-286)||(11897228-11897370)
chr8 (144-286)||(17647209-17647351)
chr8 (153-263)||(2040354-2040464)
chr8 (144-286)||(29384087-29384229)
chr8 (201-286)||(32424546-32424631)
chr8 (144-284)||(15231835-15231975)
chr8 (144-286)||(6811032-6811173)
chr8 (144-260)||(40541595-40541711)
chr8 (159-286)||(19704247-19704374)
chr8 (201-286)||(15761190-15761275)
chr8 (184-251)||(27836114-27836181)
chr8 (151-265)||(16752256-16752370)
chr8 (190-286)||(15294881-15294977)
chr8 (190-286)||(15475250-15475346)
chr8 (144-284)||(22909979-22910118)
chr8 (144-283)||(17566313-17566452)
chr8 (142-286)||(31424379-31424520)
chr8 (186-254)||(7262006-7262074)
chr8 (147-282)||(24056348-24056483)
chr8 (145-286)||(3094020-3094159)
chr8 (227-286)||(8582255-8582314)
chr8 (144-230)||(26879778-26879864)
[»] scaffold0016 (1 HSPs)
scaffold0016 (144-286)||(56200-56342)
[»] chr2 (24 HSPs)
chr2 (144-286)||(20063935-20064077)
chr2 (144-286)||(1404995-1405137)
chr2 (144-286)||(19262091-19262233)
chr2 (143-286)||(30433027-30433170)
chr2 (148-286)||(31237755-31237893)
chr2 (144-260)||(21869096-21869212)
chr2 (144-286)||(25538920-25539062)
chr2 (154-263)||(27523881-27523990)
chr2 (144-263)||(974573-974693)
chr2 (151-257)||(20034004-20034110)
chr2 (144-263)||(19245824-19245943)
chr2 (144-257)||(7302023-7302136)
chr2 (204-286)||(16766997-16767079)
chr2 (143-280)||(8428440-8428577)
chr2 (169-286)||(15588655-15588771)
chr2 (170-286)||(35565755-35565874)
chr2 (177-263)||(34578124-34578210)
chr2 (201-286)||(13502505-13502590)
chr2 (201-286)||(27407003-27407088)
chr2 (201-274)||(29661093-29661166)
chr2 (201-258)||(36430088-36430145)
chr2 (169-232)||(23863289-23863352)
chr2 (144-286)||(1690510-1690645)
chr2 (148-256)||(27749288-27749396)
[»] scaffold0186 (1 HSPs)
scaffold0186 (144-286)||(8653-8795)
[»] scaffold0079 (1 HSPs)
scaffold0079 (144-263)||(14701-14820)
[»] scaffold0061 (1 HSPs)
scaffold0061 (144-263)||(76084-76202)
[»] scaffold0017 (1 HSPs)
scaffold0017 (144-263)||(38302-38420)
[»] scaffold0417 (1 HSPs)
scaffold0417 (183-286)||(7269-7372)
[»] scaffold2084 (1 HSPs)
scaffold2084 (144-245)||(81-182)
[»] scaffold0510 (1 HSPs)
scaffold0510 (169-286)||(4-120)
[»] scaffold0603 (1 HSPs)
scaffold0603 (204-286)||(8794-8876)
[»] scaffold0048 (2 HSPs)
scaffold0048 (144-286)||(61089-61231)
scaffold0048 (204-286)||(48497-48579)
[»] scaffold0534 (1 HSPs)
scaffold0534 (144-283)||(885-1024)
[»] scaffold0042 (1 HSPs)
scaffold0042 (203-286)||(93539-93622)
[»] scaffold0028 (1 HSPs)
scaffold0028 (143-260)||(145826-145943)
[»] scaffold0027 (1 HSPs)
scaffold0027 (196-263)||(132942-133009)
[»] scaffold0526 (1 HSPs)
scaffold0526 (144-263)||(8391-8510)
[»] scaffold0001 (1 HSPs)
scaffold0001 (204-263)||(142864-142923)
[»] scaffold0182 (1 HSPs)
scaffold0182 (162-263)||(24621-24722)
[»] scaffold0150 (1 HSPs)
scaffold0150 (203-260)||(33176-33233)
[»] scaffold1178 (1 HSPs)
scaffold1178 (205-263)||(568-626)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 286
Target Start/End: Complemental strand, 19748825 - 19748545
Alignment:
Q  6 actccactcaccaaccatttggagtcttacagcctctgcctattccccaacgagtatgggaggatattagtatggtttgatagacttagacggagaaatt 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19748825 actccactcaccaaccatttggagtcttacagcctctacctattccccaacgagtatgggaggatattagtatggtttgatagacttagacgaagaaatt 19748726  T
Q  106 gggcttgactttatgcctaaaccaagagtgtggaggataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgta 205  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  19748725 gggcttgactttatgcctaaaccaagagtgtggagggcaaggttgtcaaaatcgggactttaattcaggttgaaagggaatagcaaaatcgggattcgta 19748626  T
Q  206 aaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19748625 aaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 19748545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 7223869 - 7223731
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||| ||||    
T  7223869 aaggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggact 7223770  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatca 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7223769 tttgtagaatcgatataggaaattgtaaaatcgcaatca 7223731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 17103549 - 17103407
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||| ||||||||||||||| || | ||||||||||||||||| ||||    
T  17103549 aaggttgtcaaaatcgggactttacttcaagtcgaaagggaataacaaaatcaggactcgtaaaatcgcaatcaataccgaaggattttactcaaggact 17103450  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17103449 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 17103407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 22498215 - 22498357
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||  ||| ||||||||||||||| ||||| ||| |||||||||||||||||    
T  22498215 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagact 22498314  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22498315 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 22498357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 7918125 - 7918267
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||| ||||| |||||||||| ||||||||||| ||||    
T  7918125 aaggttgtcaaaatcggggctttacttcaggtcgaaagggaatagcagaatcaggactcgtaaaattgcaatcaaaatcgaagaattttactcaaggact 7918224  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  7918225 tttgtagaatcaatataggaaattgtaaaatcgcaatcaaaat 7918267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 11327337 - 11327479
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||| ||||| ||||||| ||||| |||||||||||||  || ||||||||||||||| |||||||||| ||||||||||| ||||    
T  11327337 aaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggact 11327436  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  11327437 tttgtagaatcgatataggaaattgtaaaatcgcaaccaaaat 11327479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 17543505 - 17543647
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||| ||||| ||||||||| ||||||||||||  ||||||||||||| ||| || |||||||| ||| |||||||||||||||||||||| ||||    
T  17543505 aaggttgttaaaattgggactttacttcaggtcgaaaaggaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaaggact 17543604  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  17543605 tttgtagaatcgatattggaaattgtaaaatcgcaatcaaaat 17543647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 3573674 - 3573817
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaa-gagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||  ||    
T  3573674 aaggttgtcaaaatcgggactttacttcaggtcgaaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtaggaatttactcaactac 3573773  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    | ||||||||| |||||| |||||||||||||||||||||||||    
T  3573774 tcttgtagaatagatataagaaattgtaaaatcgcaatcaaaat 3573817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 26053074 - 26053213
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    |||||||||||| |||||||| |||||||||||||  |||||||||||  ||| |||||||||| |||| ||||||||| |||||||||||| |||||||    
T  26053074 gttgtcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgattttactcaatgactttt 26053173  T
Q  247 gtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26053174 gtagaatcgatattggaaattgtaaaatcgcaatcaaaat 26053213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 26073127 - 26073266
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    |||||||||||| |||||||| |||||||||||||  |||||||||||  ||| |||||||||| |||| ||||||||| |||||||||||| |||||||    
T  26073127 gttgtcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgattttactcaatgactttt 26073226  T
Q  247 gtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26073227 gtagaatcgatattggaaattgtaaaatcgcaatcaaaat 26073266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 286
Target Start/End: Original strand, 15527892 - 15528027
Alignment:
Q  151 tcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtag 250  Q
    ||||||||  ||||||| |||||||||||||  |||||||||||| | | ||| ||||||||||| |||||||||||||||||||||| |||||||||||    
T  15527892 tcaaaatcctgactttacttcaggtcgaaaggaaatagcaaaatcggaactcggaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 15527991  T
Q  251 aatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15527992 aatcgatataggaaattgtaaaatcgcaatcgaaat 15528027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 27233074 - 27233216
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| | ||||| |||||||| |||| ||||  ||||||| ||| || |||||||||||| ||||| |||||||||||||||| | ||    
T  27233074 aaggttgtcaaaatcgagcctttacttcaggtcaaaagggaatgacaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactcaaggtct 27233173  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    || ||||||||| ||||| ||||||||||||||||||||||||    
T  27233174 ttagtagaatcgctatagaaaattgtaaaatcgcaatcaaaat 27233216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 27614434 - 27614562
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    |||||||||||  ||| |||| ||||||||||||| |||||| |||||| ||| |||||||||| |||| |||||||||||||||||||||| |||||      
T  27614434 gttgtcaaaattaggaatttacttcaggtcgaaagggaatagtaaaatcgggactcgtaaaatcacaatcaaaatcgaaggattttactcaatgacttga 27614533  T
Q  247 gtagaatcgatataggaaattgtaaaatc 275  Q
    |||||| | ||||||||||||||||||||    
T  27614534 gtagaaacaatataggaaattgtaaaatc 27614562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 286
Target Start/End: Complemental strand, 23898160 - 23898023
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    ||||||||||||||| |||  ||||||||||| ||||| |||||||||   | ||||||||||| ||  ||||||||||||||||||||||  || ||||    
T  23898160 ttgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaactac-tttg 23898062  T
Q  248 tagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  23898061 tagaatcgatataagaaattgtaaaatctcaatcaaaat 23898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 31108504 - 31108390
Alignment:
Q  149 tgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgt 248  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||  ||||||||||| |||||| |||||| || ||||||||| || |||||||||    
T  31108504 tgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaatcgagattcgtaaaaccgcaatcaaaatcaaaagattttactaaaggacttttgt 31108405  T
Q  249 agaatcgatatagga 263  Q
    | ||| ||| |||||    
T  31108404 acaatagatgtagga 31108390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 27890740 - 27890621
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||| ||| ||||||| |||| || ||||| || ||| |||||  | | ||||||||||| ||| ||||| |||||||||||||||| ||||    
T  27890740 aaggttgtcaaattcgagactttacttcaagttgaaagggagtagtaaaattggaactcgtaaaatcgtaatcaaaattgaaggattttactcaaggact 27890641  T
Q  244 tttgtagaatcgatatagga 263  Q
    ||||||||||||||||||||    
T  27890640 tttgtagaatcgatatagga 27890621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 30912180 - 30912319
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||||| | |||  ||||||| |||||||||||||||||||   | |||||||||| |||  ||||| ||||||||||| ||||  ||    
T  30912180 taaggttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcgataatcgtaaaatctcaaccaaaattgaaggattttattcaactac 30912279  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatca 282  Q
    ||||||| |||||||||| |||||  || |||||||||||    
T  30912280 ttttgtaaaatcgatataagaaatcatagaatcgcaatca 30912319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 17250411 - 17250268
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatc--gaaggattttactcaaaga 241  Q
    |||||| ||||||||||||||||| |||||||||||||  ||| || || |  ||| ||||||||||||||| |||||   |||||||||||||||| |     
T  17250411 aaggttatcaaaatcgggactttacttcaggtcgaaaggaaatggcgaattg-ggactcgtaaaatcgcaatcaaaataaagaaggattttactcaaggt 17250313  T
Q  242 cttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||| |||||||||  |||| |||||||||| |||||||||||||    
T  17250312 ctttagtagaatcgccatagaaaattgtaaattcgcaatcaaaat 17250268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 2912061 - 2912178
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattg 268  Q
    ||||||| ||||||||| ||| |||||   | ||||||||||  |||  |||| ||||||||||||||||  ||||||||||||| | |||| |||||||    
T  2912061 ttcaggttgaaagagaagagcgaaatcgataatcgtaaaatcataatcgaaattgaaggattttactcaactacttttgtagaattgttataagaaattg 2912160  T
Q  269 taaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||    
T  2912161 taaaatcgcaatcaaaat 2912178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 21355029 - 21354942
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattt 231  Q
    |||||||||||||| |||| |||| |||| || ||||| |||||| |||||||||| ||||||||||||||| |||||||| ||||||    
T  21355029 aaggttgtcaaaattgggattttacttcaagttgaaagggaatagaaaaatcaggactcgtaaaatcgcaatcaaaatcgatggattt 21354942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 4841665 - 4841746
Alignment:
Q  205 aaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| |||| |||||| |||||||||||||||  |||||||||||||||  ||| ||||| |||||||||||||||||||    
T  4841665 aaaatcacaatcaaaatcaaaggattttactcaactacttttgtagaatcgggataagaaatcgtaaaatcgcaatcaaaat 4841746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 8275366 - 8275415
Alignment:
Q  205 aaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatc 254  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  8275366 aaaatcgcaattaaaatcgaaggattttactcaaggacttttgtaaaatc 8275415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 10508889 - 10508934
Alignment:
Q  241 acttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  10508889 acttttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 10508934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 23506193 - 23506102
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaa 238  Q
    |||||| |||| |||| |||| || | ||||||||||||||||||||||   | | |||||||| |||||||||||||||||||||| ||||    
T  23506193 gttgtcgaaatggggattttactttaagtcgaaagagaatagcaaaatcgaaaattgtaaaatcacaattaaaatcgaaggattttagtcaa 23506102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 33583444 - 33583557
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaa-aatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||||||||||||||| |||| ||| ||||||||| |  |||||| ||||   | ||||||||||  ||| |||||||||| |||||||| || ||||||    
T  33583444 gttgtcaaaatcgggattttacttccggtcgaaaggggttagcaataatcgtaaatcgtaaaatcaaaatcaaaatcgaag-attttacttaaggacttt 33583542  T
Q  246 tgtagaatcgatata 260  Q
    |||||||||||||||    
T  33583543 tgtagaatcgatata 33583557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 20432407 - 20432486
Alignment:
Q  183 gaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagg 262  Q
    |||||||||||||   | ||||||||||||||| ||||| |||| |||||||| ||  | ||||||||||||||||||||    
T  20432407 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatatagg 20432486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 27890621 - 27890582
Alignment:
Q  185 atagcaaaatcaggattcgtaaaatcgcaattaaaatcga 224  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  27890621 atagcaaaatcaggactcgtaaaatcgcaatcaaaatcga 27890582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 33592930 - 33593044
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    ||||||||||||||| |||  ||||  ||||||| ||||| ||||||    | ||||||||| |||||  |||||||| ||||| ||||||  |||||||    
T  33592930 ttgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaatcgtaaaattgcaatcgaaatcgaatgattt-actcaactacttttg 33593028  T
Q  248 tagaatcgatatagga 263  Q
    |||||| |||||||||    
T  33593029 tagaattgatatagga 33593044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 17811703 - 17811560
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||    
T  17811703 taaggttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggac 17811604  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  17811603 ttttgtagaatcgatatagaaaattgtaaaatcgcaatcaaaat 17811560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 24989548 - 24989690
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||||||||||||| || |||||||||| ||||| ||||||| ||| ||||||||| ||||| ||||||||||||||||||| || |||    
T  24989548 taaggttgtcaaaatcgggactttactttaggtcgaaagggaataacaaaatcgggactcgtaaaatggcaatcaaaatcgaaggattttact-aaggac 24989646  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  24989647 ttttgtagaatcgatataggaaattataaaatcgcaatcaaaat 24989690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 27221762 - 27221626
Alignment:
Q  151 tcaaaatcgggactttaattc-aggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgta 249  Q
    ||||||||||||||||| ||  |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  27221762 tcaaaatcgggactttacttttaggtcgaaagagtatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcggagacttttgta 27221663  T
Q  250 gaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||| |||||||||||||||||||||| |||||    
T  27221662 gaatcgatgtaggaaattgtaaaatcgcaattaaaat 27221626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 142 - 286
Target Start/End: Original strand, 44944618 - 44944762
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaaga 241  Q
    |||||||||||||||||||||||||| ||||| |||||||  |||||||||  | ||| |||||||||||||||||||||||||  |||||||| || ||    
T  44944618 ataaggttgtcaaaatcgggactttacttcagatcgaaaggaaatagcaaatgcgggactcgtaaaatcgcaattaaaatcgaacaattttacttaagga 44944717  T
Q  242 cttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  44944718 cttttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 44944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 5715636 - 5715497
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||||||||||||| |    ||||||||  ||||| |||||| ||| ||||||||||||||| |||||||| ||||||||||||| |||    
T  5715636 taaggttgtcaaaatcgggactttact----gtcgaaaggaaatagaaaaatcgggactcgtaaaatcgcaatcaaaatcgagggattttactcaaggac 5715541  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  5715540 ttttgtagaatcgatataggaaattataaaatcgcaatcaaaat 5715497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 5058883 - 5058741
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||||||||||||| ||||| || |||| ||||||||||||| | ||||||||||| ||||| ||||||||||||||||| |||| ||     
T  5058883 taaggttgtcaaaatcgggactttacttcagatcaaaagggaatagcaaaatcggaattcgtaaaattgcaatcaaaatcgaaggattttaatcaaggaa 5058784  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| |||||||||||  ||||||||||||||||||||||||    
T  5058783 ttttgt-gaatcgatataaaaaattgtaaaatcgcaatcaaaat 5058741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 11326637 - 11326495
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| | |||||| ||||||| ||||||||||||||||||  ||| || ||||||| |||| ||||| |||| ||||||||||| ||||    
T  11326637 aaggttgtcaaaatcagaactttatttcaggtggaaagagaatagcaaaattgggactcttaaaatcacaatcaaaattgaagtattttactcaaggact 11326538  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  11326537 tttgtggaatcaatataggaaattgtaaaatcgcaatcaaaat 11326495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 9685070 - 9685211
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||||| || ||| |||||||| ||| ||||||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||    
T  9685070 aggttgtaaagatccggactttacttctggtcgaaaaggaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactcgaggactt 9685169  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    || |||||||||| ||| ||||| ||||||| ||||||||||    
T  9685170 ttatagaatcgatttagaaaattttaaaatcacaatcaaaat 9685211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 286
Target Start/End: Complemental strand, 4247706 - 4247568
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    |||||||||| ||||||||| |||| |||||||| |||||  |||||  ||||||||||||||||||| ||| || ||||||||||||||| || |||||    
T  4247706 ttgtcaaaattgggactttacttcaagtcgaaagggaatacaaaaattgggattcgtaaaatcgcaatcaaattcaaaggattttactcaaggatttttg 4247607  T
Q  248 tagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||| |||||  ||||||||||||||||||    
T  4247606 tagaatcgatataagaaatcataaaatcgcaatcaaaat 4247568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 8304438 - 8304321
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||||||||||||| ||||||| |||| ||||||||||| ||||||||||  || |||||||||| |||| |||||||||||||||||||||| ||||||    
T  8304438 ggttgtcaaaatcgagactttacttcaagtcgaaagagagtagcaaaatcgcgactcgtaaaatcacaatcaaaatcgaaggattttactcaaggacttt 8304339  T
Q  246 tgtagaatcgatatagga 263  Q
    |||||||| |||||||||    
T  8304338 tgtagaattgatatagga 8304321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 20570662 - 20570802
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    ||||||||||||||||||| || ||||||| ||||| ||||| ||||||   || || |||||||||||| ||||| ||| |||||||||||| ||||||    
T  20570662 ggttgtcaaaatcgggactctacttcaggttgaaagggaataacaaaattgagactcataaaatcgcaatcaaaattgaaagattttactcaaggacttt 20570761  T
Q  246 tgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  20570762 tgtagaatcgatataagaaattataaaatcacaatcaaaat 20570802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 24725307 - 24725389
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24725307 taaaatcgcaatcaaaatcaaaggattttactcaaggacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 24725389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 39182510 - 39182368
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| || |||  ||||| || |||||||| || ||||||   | ||||||||||||||  ||||||||||||||||||||||  |||    
T  39182510 aaggttgtcaaaatcgtgattttgcttcagttccaaagagaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 39182411  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  39182410 tttgtagaatcgatataagaaattgtaaaatcgcaaccaaaat 39182368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 14055610 - 14055469
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| | |||  ||||||||||||||||  |||||||||   | | ||||||||||||  ||||||||||||||||||||||  |||    
T  14055610 aaggttgtcaaaatcgg-attttgcttcaggtcgaaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactact 14055512  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||    
T  14055511 tttgtagaaacgatataagaaattgcaaaatcgcaatcaaaat 14055469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 14365638 - 14365497
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| | |||  ||||||||||||||||  |||||||||   | | ||||||||||||  ||||||||||||||||||||||  |||    
T  14365638 aaggttgtcaaaatcgg-attttgcttcaggtcgaaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactact 14365540  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||    
T  14365539 tttgtagaaacgatataagaaattgcaaaatcgcaatcaaaat 14365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 7730160 - 7730276
Alignment:
Q  170 tcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgt 269  Q
    ||||||| |||||||| ||||||||||  | ||||||||||||||  ||||||||| | ||||||||||  ||||||||| ||| |||||| ||||||||    
T  7730160 tcaggtcaaaagagaagagcaaaatcatcaatcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgtataattgatataagaaattgt 7730259  T
Q  270 aaaatcgcaatcaaaat 286  Q
    |||||||||||||||||    
T  7730260 aaaatcgcaatcaaaat 7730276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 25842506 - 25842625
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||| ||||||||| |||| |||||||| || |||||||||| ||| ||||||||||||||| ||||| | |||||||||||||   |||    
T  25842506 aaggttatcaaaattgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaattggaggattttactcatgaact 25842605  T
Q  244 tttgtagaatcgatatagga 263  Q
    |||||||||||||| |||||    
T  25842606 tttgtagaatcgatgtagga 25842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 1977877 - 1977761
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattg 268  Q
    ||||||||||||||||| || ||||||   | ||||||||||||||| ||||||||||||||||||||||  | |||| ||||||||||||| |||||      
T  1977877 ttcaggtcgaaagagaagagaaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaatta-ttttttagaatcgatataagaaatcc 1977779  T
Q  269 taaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||    
T  1977778 taaaatcgcaatcaaaat 1977761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 21846248 - 21846364
Alignment:
Q  170 tcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgt 269  Q
    |||||||||||||| | ||||||||||  | || |||||||||||  ||||||||||||||||| ||||  |||||| ||||||||||||| ||||| ||    
T  21846248 tcaggtcgaaagaggagagcaaaatcaaaaatcctaaaatcgcaaccaaaatcgaaggattttaatcaactacttttatagaatcgatataagaaatcgt 21846347  T
Q  270 aaaatcgcaatcaaaat 286  Q
    |||||| ||||||||||    
T  21846348 aaaatcacaatcaaaat 21846364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 22687042 - 22687164
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||| |||||||||| |||  ||||| ||||||||||| |||||||||  || |||||||||| |||  ||||| |||| |||||||||||  |||    
T  22687042 aaggttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatcgagaatcgtaaaatcacaaccaaaattgaagaattttactcaactact 22687141  T
Q  244 tttgtagaatcgatataggaaat 266  Q
    ||||||||||||||||| |||||    
T  22687142 tttgtagaatcgatataagaaat 22687164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 8329876 - 8329961
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||| |||||| |||||||||||||||  ||||||||||||| |||||| ||||| ||||||| |||||||||||    
T  8329876 tcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgtagaattgatataagaaatcgtaaaattgcaatcaaaat 8329961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 4575083 - 4574965
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||||||||||| | || |||  ||||||| ||||| |||||| |||||||  | ||||||||||||||| |||||| ||| ||| |||||||  ||||    
T  4575083 aggttgtcaaaattgagatttttcttcaggttgaaagggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactactt 4574984  T
Q  245 ttgtagaatcgatatagga 263  Q
    |||||||||||||||||||    
T  4574983 ttgtagaatcgatatagga 4574965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 8329814 - 8329896
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| ||||| ||||| ||||||||||||||||  ||||||||||||| |||||| ||||| |||||||||||||||||||    
T  8329814 taaaattgcaatcaaaattgaaggattttactcaactacttttgtagaattgatataagaaatcgtaaaatcgcaatcaaaat 8329896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 23618203 - 23618317
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||| ||||||||  ||||||| || | || ||||| || |||||||||| ||| ||  ||||||||||| |||||||||| ||||||||||| |||    
T  23618203 taaggttatcaaaatcaagactttactttaagttgaaagggagtagcaaaatcgggactccgaaaatcgcaatcaaaatcgaagaattttactcaaggac 23618302  T
Q  243 ttttgtagaatcgat 257  Q
    |||||||||||||||    
T  23618303 ttttgtagaatcgat 23618317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 10285678 - 10285759
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaa 225  Q
    ||||||||||||||||||| |||| ||||||||||||||||| || |||||||  | ||||||||||||||| |||||||||    
T  10285678 aaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaatcaacaatcgtaaaatcgcaatcaaaatcgaa 10285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 26565380 - 26565465
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||| ||| ||||||||||||||||||||||  |||||||||||||| |||||  |||| ||||||| |||||||||||    
T  26565380 tcgtaaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaatcaatataaaaaatcgtaaaattgcaatcaaaat 26565465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 1981100 - 1981217
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| |||||||| || ||| |||||  | | ||||||||||| ||| ||||||||||||  |||||||| | ||    
T  1981100 aaggttatcaaaatcgggactttacttcaagtcgaaagggattagaaaaattggaactcgtaaaatcgtaatcaaaatcgaagga--ttactcaaggtct 1981197  T
Q  244 tttgtagaatcgatatagga 263  Q
    || |||||||||||||||||    
T  1981198 ttagtagaatcgatatagga 1981217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 8343602 - 8343717
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattg 268  Q
    ||||||||||||||||| | ||||||    | ||||||||  ||||| |||||||||| |||||||||||  ||||||||||||| ||||||  |||| |    
T  8343602 ttcaggtcgaaagagaagaacaaaattgacaatcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtagaattgatataaaaaatcg 8343701  T
Q  269 taaaatcgcaatcaaa 284  Q
    ||||||||||||||||    
T  8343702 taaaatcgcaatcaaa 8343717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 27509256 - 27509323
Alignment:
Q  213 aattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaat 280  Q
    ||||||||| ||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||    
T  27509256 aattaaaattgaaggattttactcaactacttttatagaatcgatataagaaattgtaaaatcgcaat 27509323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 8572490 - 8572350
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| |||||||||  ||| |||||||| |||||| || ||  ||| || | |||||||||| ||||||||| ||| ||| |||| |||     
T  8572490 aaggttgtcaaaattgggactttatctcaagtcgaaagggaatagtaatattgggactc-ttaaatcgcaatcaaaatcgaaagatgttaatcaaggaca 8572392  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| |||||| |||||| |||||| |||||||||||    
T  8572391 tttgtagaattgatata-gaaattataaaattgcaatcaaaat 8572350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 26281164 - 26281251
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggatttt 232  Q
    |||||||||||||||| |||||||| || |||||||||  ||||||| ||||||||| ||||||||||||||| ||||| ||||||||||    
T  26281164 taaggttgtcaaaatcaggactttactttaggtcgaaaaggaatagc-aaatcagga-tcgtaaaatcgcaatcaaaattgaaggatttt 26281251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 8346244 - 8346383
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    ||||| |||||| ||| |||| ||| ||||||||||||| | ||||||    | |||||| |  ||||  ||||||||||||||||||||||  ||||||    
T  8346244 gttgttaaaatcaggattttacttccggtcgaaagagaagaacaaaattgacaatcgtaagaatgcaaacaaaatcgaaggattttactcaactactttt 8346343  T
Q  247 gtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
     |||||| |||||| ||||| |||| ||||||||||||||    
T  8346344 atagaattgatataagaaatcgtaatatcgcaatcaaaat 8346383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 8346363 - 8346444
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatca 282  Q
    |||||| |||||||| |||||| |||||||||||||||  ||||||||||||| |||||| |||||  ||||||| ||||||    
T  8346363 tcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgtagaattgatataagaaatcataaaatctcaatca 8346444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 30294575 - 30294460
Alignment:
Q  168 attcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaatt 267  Q
    ||||||||||| || ||| ||||||||||  | ||||||| || |||| ||||||||||||||||||| ||  |||||| ||||||||||| | |||||     
T  30294575 attcaggtcgagagggaagagcaaaatcaaaaatcgtaaa-tcacaatcaaaatcgaaggattttacttaactacttttatagaatcgataaaagaaatc 30294477  T
Q  268 gtaaaatcgcaatcaaa 284  Q
     ||||||| ||||||||    
T  30294476 ctaaaatcacaatcaaa 30294460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 26617252 - 26617394
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| || | |||  |||||||| || || ||| |||||| |   | ||| |||||||||| |||| || ||||||||| |||||  | |    
T  26617252 aaggttgtcaaaattggaattttgcttcaggtcaaatgataattgcaaaaccgccaatcgaaaaatcgcaactaaattcaaaggattttgctcaattatt 26617351  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||  ||||||  ||||||||||||||||||||||||    
T  26617352 tttgtagaaaggatataaaaaattgtaaaatcgcaatcaaaat 26617394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 17741997 - 17741886
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaaga--gaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||| |||||  ||| |||| ||||||||||||||  |||||||||||||   | ||||||||| ||||| ||||| ||||||||||||| ||  ||||    
T  17741997 gttgttaaaattaggattttacttcaggtcgaaagaaagaatagcaaaatcgaaaatcgtaaaattgcaatcaaaattgaaggattttacttaactactt 17741898  T
Q  245 ttgtagaatcga 256  Q
    || |||||||||    
T  17741897 ttttagaatcga 17741886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 6917068 - 6916991
Alignment:
Q  208 atcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||| ||||| ||||||||||||||||  |||||  || |||||||||| |||||| |||||| |||||||||||    
T  6917068 atcgcaatcaaaattgaaggattttactcaactactttcata-aatcgatataagaaattataaaattgcaatcaaaat 6916991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 11325332 - 11325191
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| ||||  ||  |||| ||| |||||||| |||||||||   | ||||||||||||||  ||| |  |||| ||||||||||  |||    
T  11325332 aaggttgtcaaaattgggatcttgcttcacgtcaaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaatttcaagggttttactcaactact 11325233  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    | |||| ||| |||||| |||||||||||||  ||||||||||    
T  11325232 tctgtaaaattgatata-gaaattgtaaaattacaatcaaaat 11325191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 21157525 - 21157587
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    |||||||||| |||| ||||| ||||||||||| ||||  |||||||||||||| ||||||||    
T  21157525 tcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatatagga 21157587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 26340212 - 26340263
Alignment:
Q  208 atcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    |||||||| |||||||||| |||||||||||| |||||| |||||||||||||    
T  26340212 atcgcaatcaaaatcgaagaattttactcaaa-acttttatagaatcgatata 26340263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 8629512 - 8629622
Alignment:
Q  153 aaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaa 252  Q
    ||||||||||||| | || |||| ||||| |||||| |||||  ||| || ||||| |||||| | ||||  ||  |||||||||| || ||||||||||    
T  8629512 aaaatcgggacttcactttaggttgaaagggaatagtaaaattgggactcataaaaacgcaatcacaatcagagagttttactcaaggaattttgtagaa 8629611  T
Q  253 tcgatatagga 263  Q
    |||||| ||||    
T  8629612 tcgatacagga 8629622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 9770466 - 9770324
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| | ||    
T  9770466 aaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtct 9770367  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  9770366 tttgtagaatcgatatagcaaattgtaaaatcgcaatcaaaat 9770324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 23064737 - 23064878
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| | ||||| | | ||||||||||||||| ||||| ||||||||||| |||| |||||    
T  23064737 aggttgtcaaaatcgggactttacttcaggtcgaaagggaataacgaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttattcaaggactt 23064836  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  23064837 ttgtagaatcgatataggaaattgtaaaattgcaatcaaaat 23064878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 36121179 - 36121035
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaaga 241  Q
    |||||||||||||||||||| ||||| |||| || ||||| |||||||  |||| ||| ||||||||||| ||| ||||||||| |||||||||||| ||    
T  36121179 ataaggttgtcaaaatcgggtctttacttcaagttgaaagggaatagcttaatcgggactcgtaaaatcggaatcaaaatcgaaagattttactcaagga 36121080  T
Q  242 cttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  36121079 cttttgtagtatcgatataggaaattgtaaaatcgcaatcaaaat 36121035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 5376019 - 5375877
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| ||||||||| |||||||| |||   ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  5376019 aaggttgtcaaaattgggactttacttcaggtcaaaaataaatagtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 5375920  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    | ||||||||| |||||||||||||||||||| ||||||||||    
T  5375919 tctgtagaatctatataggaaattgtaaaatcacaatcaaaat 5375877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 9911185 - 9911328
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||| |||||||||  |||||||| ||||  ||||||| |||||| |||||| ||| ||||||||||||||| |||| ||||||||||||||| |  ||    
T  9911185 taagggtgtcaaaattaggactttacttcatatcgaaagggaatagtaaaatcgggactcgtaaaatcgcaataaaaaacgaaggattttactcgagaac 9911284  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  9911285 ttttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 9911328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 13551448 - 13551589
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||||| || ||| |||||||| ||| ||||||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||    
T  13551448 aggttgtaaagatccggactttacttctggtcgaaaaggaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactcgaggactt 13551547  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    || |||||||||| ||| ||||| ||||||| ||||||||||    
T  13551548 ttatagaatcgatttagaaaattttaaaatcacaatcaaaat 13551589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 6346730 - 6346872
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| | |||  ||||||||||||| ||| |||||||||   | |||||||||| |||| ||||||||||||||||||||||  |||    
T  6346730 aaggttgtcaaaatcggaaatttgcttcaggtcgaaagggaagagcaaaatcgaaaatcgtaaaatcacaatcaaaatcgaaggattttactcaactact 6346829  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
T  6346830 tttgtagaatgaatataagaaattgtaaaatcgcaatcaaaat 6346872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 8010915 - 8011053
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||||||     || | || ||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||  | |    
T  8010915 aaggttgtcaaaatcgggactta----caaggcggaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaactatt 8011010  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||| ||||||||||||| |||||||||||||||||||||||||    
T  8011011 tttatagaatcgatataagaaattgtaaaatcgcaatcaaaat 8011053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 55476342 - 55476226
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| |||||||| || ||  |||||| | | ||||||||||||||| |||||||||||||||||||||| ||||    
T  55476342 aaggttatcaaaatcgggactttacttcaagtcgaaagggagtaataaaatcggtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 55476243  T
Q  244 tttgtagaatcgatata 260  Q
    |||||||||||||||||    
T  55476242 tttgtagaatcgatata 55476226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 5361760 - 5361880
Alignment:
Q  164 tttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    |||| ||||||||||||||||| ||||||||    | ||||||||| ||||  ||||||||||| ||||||||||  |||||||||||||||||||| ||    
T  5361760 tttatttcaggtcgaaagagaagagcaaaatagacaatcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatcgatatatga 5361859  T
Q  264 aattgtaaaatcgcaatcaaa 284  Q
    ||| |||||||||||||||||    
T  5361860 aatcgtaaaatcgcaatcaaa 5361880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 13023903 - 13023780
Alignment:
Q  153 aaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaa 252  Q
    ||||| ||||||||| |||| |||||||||||||||||||||| | | |||||||||| |||| || || ||| |||||||| ||| || ||||||| ||    
T  13023903 aaaattgggactttacttcaagtcgaaagagaatagcaaaatcggaactcgtaaaatcacaatcaagatagaatgattttacccaaggaattttgtaaaa 13023804  T
Q  253 tcgatataggaaattgtaaaatcg 276  Q
    ||||||||||||||| ||||||||    
T  13023803 tcgatataggaaattttaaaatcg 13023780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 37240568 - 37240450
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatat-aggaaatt 267  Q
    |||||| |||||||||| ||| |||||   | ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| | |||||     
T  37240568 ttcaggacgaaagagaagagctaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatataaagaaatc 37240469  T
Q  268 gtaaaatcgcaatcaaaat 286  Q
    |||||||| ||||||||||    
T  37240468 gtaaaatcacaatcaaaat 37240450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 10143197 - 10143112
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||| ||||||||||||||||| ||||  | |||||||||||||||||| || ||||||||||||||||||||||    
T  10143197 tcgtaaaatcgcaatcaaaatcgaaggattttattcaactaattttgtagaatcgatataagagattgtaaaatcgcaatcaaaat 10143112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 24719922 - 24719787
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| || |||  ||||||||||||| ||| |||||||||       | ||||||| ||| | |||||||||||||||||| |  |||    
T  24719922 aaggttgtcaaaatcgagattttgcttcaggtcgaaagggaagagcaaaatc-------gaaaaatcgaaatcacaatcgaaggattttactcgattact 24719830  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  24719829 tttgtagaatcgatataagaaatcgtaaaatcgcaatcaaaat 24719787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 5943044 - 5943166
Alignment:
Q  154 aaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaat 253  Q
    |||||| || |||| || |||||||||| ||| ||||||||||  | |||||||||||||| |||||| ||||||||||||||||  |||||||||||||    
T  5943044 aaatcgagattttattttaggtcgaaagggaagagcaaaatcaaaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaat 5943143  T
Q  254 cgatataggaaattgtaaaatcg 276  Q
    || | || ||||| |||||||||    
T  5943144 cggtttaagaaatcgtaaaatcg 5943166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 7045298 - 7045154
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| || | |||| ||||||||||||| ||| ||||||||||  | || |||||||||||| ||||||||||||||||||||||   ||    
T  7045298 aaggttgtcaaaataggaattttacttcaggtcgaaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaactgct 7045199  T
Q  244 tttgtagaatc--gatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||  ||||||  |||||| ||||| |||||||  ||||||||||    
T  7045198 tttcaagaatcgagatataagaaatcgtaaaatatcaatcaaaat 7045154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 10394921 - 10394824
Alignment:
Q  187 agcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaa 284  Q
    ||||||||||  | ||||||||||||||| |||||||||||| |||||||||  ||||||||||||||| |||||||||| |||||||  ||||||||    
T  10394921 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtagaatcggtataggaaatcgtaaaattacaatcaaa 10394824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 18459406 - 18459528
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| || |||  ||||||| |||||  || |||||||||   | ||||||||||||||||||||||||||||||| ||| ||  | |    
T  18459406 aaggttgtcaaaatcgagattttgcttcaggttgaaaggaaagagcaaaatcgacaatcgtaaaatcgcaattaaaatcgaaggatttgacttaactaat 18459505  T
Q  244 tttgtagaatcgatataggaaat 266  Q
    |||||||||| |||||| |||||    
T  18459506 tttgtagaattgatataagaaat 18459528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 17466435 - 17466291
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaaga 241  Q
    |||||||||||||||  || | |||  |||| ||||||||||   |||||||||   | ||||||||| ||||  ||||| ||| |||| |||||||  |    
T  17466435 ataaggttgtcaaaactggcattttgcttcaagtcgaaagagctgagcaaaatcgacaatcgtaaaattgcaaacaaaattgaaagattatactcaacta 17466336  T
Q  242 cttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||    
T  17466335 cttttgtggaatcgatataagaaattgtaaaattgcaatcaaaat 17466291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 7045057 - 7044975
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||| ||||||||| ||||||||||||  ||||||| | |||||||||| ||||| |||||||  ||||||||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttgaataatcgatataagaaatcgtaaaatatcaatcaaaat 7044975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 8367511 - 8367437
Alignment:
Q  189 caaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    ||||||| ||| ||||||||| ||||| |||||||||||||||||||||| |||||| |||  ||||||||||||    
T  8367511 caaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggactttggtaatatcgatatagga 8367437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 8889570 - 8889438
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||  ||||||||||||||||  ||||||||    | | ||||||||||||  ||||||||||||| ||||||||  |||    
T  8889570 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagag-agcaaaattgacaattgtaaaatcgcaaccaaaatcgaaggatcttactcaactact 8889472  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||         ||||||||||||||||||||||||    
T  8889471 tttgtagaat---------aaattgtaaaatcgcaatcaaaat 8889438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 7452859 - 7452731
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||  ||| |||  ||||||||||||| ||| || ||| |    | ||||||||||||||| |||||||||||| |||||||||  |||    
T  7452859 aaggttgtcaaaattaggattttgcttcaggtcgaaagggaagagaaaagttgaaaatcgtaaaatcgcaatcaaaatcgaagga-tttactcaactact 7452761  T
Q  244 tttgtagaatcgatataggaaattgtaaaa 273  Q
    ||||||||||| ||||| ||||| ||||||    
T  7452760 tttgtagaatcaatatacgaaatcgtaaaa 7452731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 8743540 - 8743658
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| ||| ||   ||| ||||||| |||| |||||||||||  | | |||| |||| ||| ||||||||| ||||||||||||  ||     
T  8743540 aaggttgtcaaaatccggatttagcttctggtcgaatgagactagcaaaatcaaaaatagtaacatcgtaatcaaaatcgaaagattttactcaactaca 8743639  T
Q  244 tttgtagaatcgatatagg 262  Q
    |||||| ||||||||||||    
T  8743640 tttgtataatcgatatagg 8743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 9149556 - 9149640
Alignment:
Q  203 gtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgt-aaaatcgcaatcaaaat 286  Q
    |||||||  |||| ||||| ||||||||||||||||  ||||| |||||||||||||| ||||| || |||| ||||||||||||    
T  9149556 gtaaaattccaatcaaaattgaaggattttactcaactactttcgtagaatcgatataagaaatcgtaaaaaacgcaatcaaaat 9149640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 4157322 - 4157269
Alignment:
Q  203 gtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcga 256  Q
    ||||||||||||| || |||||| ||||||||||||  ||||||||||||||||    
T  4157322 gtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatcga 4157269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 4157609 - 4157556
Alignment:
Q  203 gtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcga 256  Q
    ||||||||||||| || |||||| ||||||||||||  ||||||||||||||||    
T  4157609 gtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatcga 4157556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 8931516 - 8931441
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaa 279  Q
    ||||| |||||  ||||||||||||||||||||||  |||||  || |||| ||||| |||||| |||||||||||    
T  8931516 taaaaccgcaaccaaaatcgaaggattttactcaactactttgataaaatcaatataagaaattataaaatcgcaa 8931441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 5884129 - 5884174
Alignment:
Q  218 aaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    |||||||||||||||||||||  | |||||||||||| ||||||||    
T  5884129 aaatcgaaggattttactcaactatttttgtagaatcaatatagga 5884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 28746130 - 28745988
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||  |||    
T  28746130 aaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaact 28746031  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28746030 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 28745988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 24619971 - 24620114
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||||| |||||| |||| ||| |||| ||||||||||||  ||| | ||||||||||||| ||||||||||||||||||||||||||    
T  24619971 taaggttgtcaaaatcggaactttacttcaagtcaaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggattttactcaaagac 24620070  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  24620071 ttttgtagaatcgatatagaaaattgtaaaatcgcaatcaaaat 24620114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 39428258 - 39428115
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaat----cgaaggattttactcaaagac 242  Q
    ||||||||||||||||||||| ||  ||| ||||| ||||||||||||| ||| || |||||||||||| |||||    ||||||||||||||||||||     
T  39428258 gttgtcaaaatcgggactttacttgcggttgaaagggaatagcaaaatcgggactcataaaatcgcaatcaaaataaatcgaaggattttactcaaagat 39428159  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  39428158 ttttgtggaatcgatataggaaattgtaaaatcgcaatcaaaat 39428115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 8592174 - 8592293
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||| |||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||||||| |||||||||||||||||||||| ||||    
T  8592174 aaggttgtcgaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 8592273  T
Q  244 tttgtagaatcgatatagga 263  Q
    ||||||||||||||||||||    
T  8592274 tttgtagaatcgatatagga 8592293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 17064662 - 17064519
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||| |||| |||  |||||||||||||| || | |||||||   | ||||||||||||||| ||||||||||||||||||||||  ||    
T  17064662 taaggttgtcaaaattgggattttgcttcaggtcgaaagaaaagatcaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactac 17064563  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||    
T  17064562 ttttgtagaatcaatataagaaattgtaaaattgcaatcaaaat 17064519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 29067630 - 29067489
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| |||||| ||||||||||| | ||||||||||||| | | || ||||||| |||| ||| |||||||||||||||||| || |    
T  29067630 aaggttgtcaaaatcggaactttacttcaggtcgaatgggaatagcaaaatcggaactcataaaatctcaatcaaa-tcgaaggattttactcaaggatt 29067532  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| ||||| |||| |||||||||||||||||||||    
T  29067531 tttgtagaattgatattggaagttgtaaaatcgcaatcaaaat 29067489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 20756331 - 20756234
Alignment:
Q  189 caaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||| ||| ||||||||||||||| ||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  20756331 caaaatcgggactcgtaaaatcgcaatcaaaattgaaagattttactcaaggatttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 20756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 3449085 - 3449227
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| |||| |||  || |||| ||||||||| |||||||||   | ||||||||||||||  ||||||||| ||||||| ||||  |||    
T  3449085 aaggttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaatgattttattcaactact 3449184  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  3449185 tttgtagaatcgatataagaaaatgtaaaatcgcaatcaaaat 3449227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 25870097 - 25870239
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| || |||  || |||||||||||||| || ||||||   | ||||||||||||||  |||||| |||||||||||||||  |      
T  25870097 aaggttgtcaaaatcgagattttgctttaggtcgaaagagaagagtaaaatcgacaatcgtaaaatcgcaaccaaaatcaaaggattttactcaactaag 25870196  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  25870197 tttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 25870239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 20766676 - 20766793
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| ||||  |||||||||| ||||||||||  || ||||||||||||||| |||||||||  ||||||||||| | ||    
T  20766676 aaggttgtcaaaatcgggactttacttcaactcgaaagagagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaaaattttactcaagggct 20766775  T
Q  244 tttgtagaatcgatatag 261  Q
    |||| |||||||||||||    
T  20766776 tttggagaatcgatatag 20766793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 3041570 - 3041458
Alignment:
Q  151 tcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtag 250  Q
    |||||||||||| |||| |||| |||||||  || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  3041570 tcaaaatcgggattttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 3041471  T
Q  251 aatcgatatagga 263  Q
    || |||| |||||    
T  3041470 aaacgatgtagga 3041458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 22355840 - 22355979
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||| |||||||||| ||||||  |||||||||||  ||||||||||||| ||| ||||||||||||||| |||||| || ||||||| |||| |||    
T  22355840 taaggttctcaaaatcggaactttacatcaggtcgaaatggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaagattttattcaaggac 22355939  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||| ||||||||    ||||||||||| ||||| ||||||    
T  22355940 ttttgtaaaatcgata----aaattgtaaaaccgcaaacaaaat 22355979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 8560232 - 8560351
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| ||| |||| || ||||||||||  || |||| |||||||||| |||||||||||||||||||||| |  |    
T  8560232 aaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaaggttt 8560331  T
Q  244 tttgtagaatcgatatagga 263  Q
    ||||||||||| ||||||||    
T  8560332 tttgtagaatcaatatagga 8560351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 22137628 - 22137489
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    ||||||||||||| || |||  ||||||||||||||||| ||||||||||| | | |||||||| |||  |||||| ||| |||||||||||  ||||||    
T  22137628 gttgtcaaaatcgagattttgtttcaggtcgaaagagaagagcaaaatcagcaatagtaaaatcacaaccaaaatcaaagaattttactcaactactttt 22137529  T
Q  247 gtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||| ||||| |||||| |  |||||||||    
T  22137528 gtagaatcgatataagaaatcgtaaaaccaaaatcaaaat 22137489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 22971162 - 22971044
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||| ||||||||| |||| ||  |||| || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  22971162 aaggttatcaaaattgggactttacttcaagttaaaag-gagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 22971064  T
Q  244 tttgtagaatcgatatagga 263  Q
    |||||||||| ||| |||||    
T  22971063 tttgtagaattgatgtagga 22971044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 18014347 - 18014226
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaaga 241  Q
    |||||||| ||||||||||||||||| |||| ||  |||  || |||||||||  ||| ||||||||||||||| |||||||||||||||||||||| ||    
T  18014347 ataaggttatcaaaatcgggactttacttcaagttaaaatggagtagcaaaattgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaagga 18014248  T
Q  242 cttttgtagaatcgatatagga 263  Q
    ||||| || || ||||||||||    
T  18014247 cttttataaaaccgatatagga 18014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 10872490 - 10872621
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| ||| |||| |||||||| |||| ||| || |||||||  | || |||||||||||| ||||| ||||||||||||| ||  |||    
T  10872490 aaggttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatcaaaaatcataaaatcgcaatcaaaattgaaggattttactaaactact 10872589  T
Q  244 tttgtagaatcgatataggaaattgtaaaatc 275  Q
    |||| |||||||||||| ||||| ||||||||    
T  10872590 tttgaagaatcgatataagaaatcgtaaaatc 10872621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 27676787 - 27676648
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    ||||| |||||| ||| |||  |||| |||||||| ||| |||||||||   | || |||||||||||| ||||||||| ||||||||||||  ||||||    
T  27676787 gttgttaaaatcaggattttgcttcaagtcgaaagggaagagcaaaatcgaaaatcttaaaatcgcaatcaaaatcgaaagattttactcaactactttt 27676688  T
Q  247 gtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||| |||||||||| ||||| |||||||| ||||||||||    
T  27676687 gtaaaatcgatataagaaatcgtaaaatcacaatcaaaat 27676648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 41671533 - 41671426
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||  ||||||||||||||||| |||||||||   | | ||||||||||||  ||||||||||||||||||||||  |||    
T  41671533 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcgataattgtaaaatcgcaaccaaaatcgaaggattttactcaactact 41671434  T
Q  244 tttgtaga 251  Q
    ||||||||    
T  41671433 tttgtaga 41671426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 13286298 - 13286156
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||   | |||  ||||||||| ||| ||| || |||||||  | ||||||||||||||| |||||| || ||||||||||||  |||    
T  13286298 aaggttgtcaaaatcacaattttgcttcaggtcggaagggaagagaaaaatcaaaactcgtaaaatcgcaatcaaaatcaaaagattttactcaactact 13286199  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| ||||| |||||||| |||| |||||    
T  13286198 tttgtagaatcgatataagaaatcgtaaaatcacaatgaaaat 13286156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 17796918 - 17796779
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||| ||||||| | || ||| |||||||||||||| ||| || ||||| |  | ||||||||| |||||||||||||||| |||||||||||  ||||    
T  17796918 aggttatcaaaattgagattttgattcaggtcgaaagggaaaagaaaaataaaaaatcgtaaaattgcaattaaaatcgaagcattttactcaactactt 17796819  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||  ||| ||||| ||||||||| |||||||||    
T  17796818 ttgtagaatcg--ataagaaatcgtaaaatcgaaatcaaaat 17796779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 19105358 - 19105219
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||| ||||||| | || ||| |||||||||||||| ||| || ||||| |  | ||||||||| |||||||||||||||| |||||||||||  ||||    
T  19105358 aggttatcaaaattgagattttgattcaggtcgaaagggaaaagaaaaataaaaaatcgtaaaattgcaattaaaatcgaagcattttactcaactactt 19105259  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||  ||| ||||| ||||||||| |||||||||    
T  19105258 ttgtagaatcg--ataagaaatcgtaaaatcgaaatcaaaat 19105219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 42697201 - 42697060
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| ||| |||  ||||||||||| ||||| || ||||||   | | |||||||||||| |||||| ||||||||||| ||||  |||    
T  42697201 aaggttgtcaaaatcaggattttgcttcaggtcgaatgagaagag-aaaatcgacaattgtaaaatcgcaactaaaattgaaggattttattcaactact 42697103  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||  |||| |||||||||||||    
T  42697102 tttgtagaatcgatataagaaatcataaactcgcaatcaaaat 42697060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 27090796 - 27090648
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||| |||||| || |||| || |||||||||| |||||| |||||    | |||||| |||||||| |||||||||||||||||||||| || |    
T  27090796 aaggttgtcgaaatcgagattttactttaggtcgaaagggaatagaaaaattgcaaatcgtaagatcgcaataaaaatcgaaggattttactcaaggaat 27090697  T
Q  244 tttgtagaatcgatatagg------aaattgtaaaatcgcaatcaaaat 286  Q
    |||||| ||||||||||||      |||| |||||||||||||||||||    
T  27090696 tttgtataatcgatataggatagcaaaatcgtaaaatcgcaatcaaaat 27090648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 6136387 - 6136486
Alignment:
Q  187 agcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||  | ||||||||||||||| |||||| || ||||||||||||  |||||| ||||||||||||| ||||| |||||||| ||||||||||    
T  6136387 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttatagaatcgatataagaaatcgtaaaatcacaatcaaaat 6136486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 9152761 - 9152901
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| ||| |||  || |||||||||||||| || |||||||  | ||||||||||| ||  ||||||||| ||||| ||||||  | |    
T  9152761 aaggttgtcaaaatcaggattttgctt-aggtcgaaagagaagagtaaaatcaacaatcgtaaaatcgtaaccaaaatcgaaagatttgactcaactatt 9152859  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||| || |||||||||||||| ||||||||||    
T  9152860 tttgtagaatcgat-tatgaaattgtaaaatcacaatcaaaat 9152901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 28136059 - 28135974
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||| || ||||||||||||||||||||||  ||||||||| ||| |||||| ||||||||||||| | |||||||||    
T  28136059 tcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgtaaaattgatataagaaattgtaaaataggaatcaaaat 28135974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 8155964 - 8156043
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaa 283  Q
    ||||||||||| ||| |||||||||||||||||||  |||||||||| || |||||| |||| |||||||||||||||||    
T  8155964 taaaatcgcaactaagatcgaaggattttactcaactacttttgtagcattgatataagaaactgtaaaatcgcaatcaa 8156043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 19348906 - 19348788
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||| ||||||| | ||||||| |||| ||| |||| || ||||||||||  || ||||||||||||||| ||||| ||||||||||| | || |||||    
T  19348906 aggttatcaaaattgagactttacttcaagtcaaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatggaaggattttattgaaggactt 19348807  T
Q  245 ttgtagaatcgatatagga 263  Q
    || || |||||||||||||    
T  19348806 ttataaaatcgatatagga 19348788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 27055449 - 27055328
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaaga 241  Q
    ||||| ||||||||||||| | |||| |||||||  ||||  ||||| ||||||   | ||||||||||||||||||||| ||| | ||||||| ||| |    
T  27055449 ataagattgtcaaaatcggaattttacttcaggtaaaaaggaaatagtaaaatcgcaaatcgtaaaatcgcaattaaaattgaaaggttttactaaaaaa 27055350  T
Q  242 cttttgtagaatcgatatagga 263  Q
    | ||||||||||||||| ||||    
T  27055349 catttgtagaatcgatacagga 27055328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 24649524 - 24649588
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaa 208  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||  ||| ||||||||    
T  24649524 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaa 24649588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 21963778 - 21963643
Alignment:
Q  151 tcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtag 250  Q
    ||||||||| || |||  ||||||||||||||||| |||||||||   | | |||||||| |||  |||||  ||| |||||||||||  |||||| |||    
T  21963778 tcaaaatcgagattttgtttcaggtcgaaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatag 21963679  T
Q  251 aatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| ||||| |||||| |  |||||||||    
T  21963678 aatcgatataagaaatcgtaaaaccagaatcaaaat 21963643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 21986214 - 21986079
Alignment:
Q  151 tcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtag 250  Q
    ||||||||| || |||  ||||||||||||||||| |||||||||   | | |||||||| |||  |||||  ||| |||||||||||  |||||| |||    
T  21986214 tcaaaatcgagattttgtttcaggtcgaaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatag 21986115  T
Q  251 aatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| ||||| |||||| |  |||||||||    
T  21986114 aatcgatataagaaatcgtaaaaccagaatcaaaat 21986079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 21553671 - 21553786
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggatttt-actcaaagacttt 245  Q
    ||||| ||||||||||||||| ||||  ||||||| || ||| |||||| ||| | ||||  ||||||| ||||||||||| |||| | |||| ||||||    
T  21553671 gttgtaaaaatcgggactttacttcaaatcgaaagggagtagaaaaatcgggactggtaa--tcgcaatcaaaatcgaaggttttttattcaaggacttt 21553768  T
Q  246 tgtagaatcgatatagga 263  Q
    |||||||| |||||||||    
T  21553769 tgtagaattgatatagga 21553786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 15515033 - 15515163
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||| |||||||||| |||  ||||||| ||||||||  | |||||||   | | ||||||||  || ||||||||||| |||||||||||  |||    
T  15515033 aaggttgttaaaatcgggattttgcttcaggttgaaagagatgaccaaaatcgacaattgtaaaatcttaactaaaatcgaagtattttactcaactact 15515132  T
Q  244 tttgtagaatcgatataggaaattgtaaaat 274  Q
    ||| |||||||  || | |||||||||||||    
T  15515133 tttatagaatcattagaagaaattgtaaaat 15515163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 13006174 - 13006089
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttac 234  Q
    ||||||||||||||| |||  || |||||||||| ||||||||||||    | ||||||||||||||| ||||| ||| ||||||||    
T  13006174 ttgtcaaaatcggga-tttgctttaggtcgaaagggaatagcaaaattgaaaatcgtaaaatcgcaatcaaaattgaatgattttac 13006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 30727636 - 30727714
Alignment:
Q  147 gttgtcaaaatcgggactttaa-ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcga 224  Q
    ||||| |||||| ||||||| | ||||||| ||||| |||||||||||||  || || |||||||||||| ||||||||    
T  30727636 gttgttaaaatctggacttttacttcaggttgaaagggaatagcaaaatcgagactcctaaaatcgcaatcaaaatcga 30727714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 6860986 - 6861038
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatca 196  Q
    |||||||||||||| |||| |||  ||||||||||||| |||||| |||||||    
T  6860986 aaggttgtcaaaattgggattttgcttcaggtcgaaagggaatagtaaaatca 6861038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 18844068 - 18843927
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||| || ||||||||||| |||||    
T  18844068 aggttgtcaaaatcggaactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcggagtattttactcaaggactt 18843969  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  18843968 ttgtagaatccatataggaaattgtaaaatcgcaatcaaaat 18843927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 41688441 - 41688583
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| || ||| |||||| ||||||||||||| ||| || |||||||||||  ||||||||||||||||||| || ||||    
T  41688441 aaggttgtcaaaatcgggactttactttaggacgaaagggaatagcaaaatcgggactcctaaaatcgcaaccaaaatcgaaggattttacttaaggact 41688540  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  41688541 tttgtagaatcgatatagaaaattgtaaaatcgcaatcaaaat 41688583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 20321298 - 20321155
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||| ||||||||| |||||||| |||  |||||| |||||| ||| || |||||||||||| ||||| ||||||||||||| || |||    
T  20321298 taaggttgtcaaaattgggactttacttcaggtcaaaaaggaatagtaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactgaaggac 20321199  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  20321198 ttttgtagaatctatataggaaattgtaaaatcgcaatcaaaat 20321155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 43235222 - 43235080
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| ||||||||| |||  | |||||| ||||||||||||||| | || |||||||||||| ||||||||||||||||||||||  |||    
T  43235222 aaggttgtcaaaattgggactttacttcgagacgaaagggaatagcaaaatcagtactcataaaatcgcaatcaaaatcgaaggattttactcaagaact 43235123  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  43235122 tttgtagaatcgatataaaaaattgtaaaatcgcaatcaaaat 43235080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 19579298 - 19579155
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaata-gcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||| ||||||||||||| |||| ||||||||||||| || || |||||||  ||| || |||||||||||| ||||||||||||||| |||||| |||    
T  19579298 aaggtagtcaaaatcgggattttacttcaggtcgaaagggagtaagcaaaattgggactcataaaatcgcaatcaaaatcgaaggatttcactcaaggac 19579199  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  19579198 ttttgtagaatcgttatagaaaattgtaaaatcgcaatcaaaat 19579155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 19042206 - 19042343
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    |||||||| ||| |||||||  |  ||||||||||  |||||||||||  ||| |||||||||| ||||||||||||||| |||||||| || |||||||    
T  19042206 gttgtcaatatcaggactttgctctaggtcgaaaggaaatagcaaaatagggactcgtaaaatcacaattaaaatcgaagaattttacttaaggactttt 19042305  T
Q  247 gtagaatcgatataggaaattgtaaaatcgcaatcaaa 284  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19042306 gtagaatcgatataggaaattgtaaaatcgcaatcaaa 19042343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 27339961 - 27340104
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||||| |||||| |||| || ||||| |||||||||||||   | |||| |||||||||| |||||||||||||||||||||  |||    
T  27339961 taaggttgtcaaaatcggaactttacttcaagttgaaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaatcgaaggattttactcacggac 27340060  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||| |||||| |||||  ||||||||||||||||||    
T  27340061 ttttgtagaattgatataagaaatattaaaatcgcaatcaaaat 27340104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 41427773 - 41427654
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| ||||||| |||  |||||||| || |||||||||| ||| ||||||||||||||| |||||||||||||||||||| | ||||    
T  41427773 aaggttgtcaaaatcgagactttacttcgagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcgaggact 41427674  T
Q  244 tttgtagaatcgatatagga 263  Q
    ||||||||||||||||||||    
T  41427673 tttgtagaatcgatatagga 41427654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 18051308 - 18051450
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||| ||||||||||||| |||| || |||||||||| |||||| |||||| ||| | ||| ||||||||| |||||| ||| |||||| | || ||||    
T  18051308 aaggtagtcaaaatcgggattttactttaggtcgaaagggaatagaaaaatcgggacttgtagaatcgcaatcaaaatcaaagaattttattgaaggact 18051407  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  18051408 tttgtagaatcgatataggaaattgtaaaatcgcaagcaaaat 18051450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 15051872 - 15051981
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| |||||||  || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  15051872 aaggttatcaaaatcgggactttacttcaagtcgaaaaggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 15051971  T
Q  244 tttgtagaat 253  Q
    ||||||||||    
T  15051972 tttgtagaat 15051981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 23172265 - 23172345
Alignment:
Q  206 aaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23172265 aaatcgtaatcaaaatcgaagaattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 23172345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 22645502 - 22645638
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||| |||| |||||| ||| |||| |||| ||||||||||||   || ||||||||| ||||| |||||||||||||||||||||||||||    
T  22645502 aaggttgtcaaagtcggaactttacttctggtctaaagggaatagcaaaattgagactcgtaaaattgcaatcaaaatcgaaggattttactcaaagact 22645601  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    | |       | |||||||||||||||||||| ||||||||||    
T  22645602 tct------acaatataggaaattgtaaaatcacaatcaaaat 22645638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 43005633 - 43005776
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||||||| |||  || || |||||||  ||||| ||| ||   | | ||||||||||||| ||||| ||| ||||||||||||   |    
T  43005633 taaggttgtcaaaatcgggattttgctttagatcgaaaggaaatagaaaattcgaaaattgtaaaatcgcaatcaaaattgaaagattttactcaacttc 43005732  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  43005733 ttttgtagaatcgatataggaaatcgtaaaatcgcaattaaaat 43005776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 19377957 - 19377841
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||| || | |||||| || | || ||||| |||||||||||||  || ||||||| |  |||| |||||||||||||||||||||| ||||    
T  19377957 aaggttgtcaaagtcagtactttactttaagtggaaagggaatagcaaaatcgagaatcgtaaatttacaatcaaaatcgaaggattttactcaaggact 19377858  T
Q  244 tttgtagaatcgatata 260  Q
    |||||||||||||||||    
T  19377857 tttgtagaatcgatata 19377841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 6852341 - 6852417
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaa 220  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||| || |||||| ||||| ||||    
T  6852341 aaggttgtcaaaatcgggacttcacttcaggtcgaaagggaatagcaaaatcgggactcataaaattgcaatcaaaa 6852417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 38158101 - 38158181
Alignment:
Q  206 aaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||  ||||||||||||||||||||||  | |||||||||||| || || |||||||||||||| ||||||||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaactatttttgtagaatctatgtaagaaattgtaaaatcacaatcaaaat 38158181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 22984643 - 22984695
Alignment:
Q  211 gcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    ||||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  22984643 gcaatcaaaatcgaaggattttactcaaggaattttgtagaatcgatatagga 22984695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 21058988 - 21059074
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggatttt-actcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||  ||||||||| |||||| ||| ||  |||||||||||||  ||||| |||||| ||||||||||||||||||    
T  21058988 tcgtaaaatcgcaaccaaaatcgaaagatttttacttaactacttttgtagaatttatataagaaattataaaatcgcaatcaaaat 21059074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 17624945 - 17624837
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactttt 246  Q
    ||||||||||||| ||||||  || ||||| ||||||||||||||||||       ||||||||||||| |||||| || ||||||||||||  ||||||    
T  17624945 gttgtcaaaatcgagactttgtttaaggtcaaaagagaatagcaaaatc-------gtaaaatcgcaatcaaaatcaaaagattttactcaactactttt 17624853  T
Q  247 gtagaatcgatatagg 262  Q
    ||  |||| |||||||    
T  17624852 gttaaatcaatatagg 17624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 24648335 - 24648247
Alignment:
Q  172 aggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    |||||||||| ||| || ||||||   | ||||||||||| ||| |||||| |||||||||||||||  |||||||||||||| |||||    
T  24648335 aggtcgaaagggaagagtaaaatcgaaaatcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtagaatcaatata 24648247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 26021668 - 26021537
Alignment:
Q  141 gataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaag 240  Q
    |||||||||||||||||||||| |||  |||||| | |||| ||| |||||||||         |||||| |||| ||||||| ||||||||||||||      
T  26021668 gataaggttgtcaaaatcgggattttgcttcaggccaaaagggaagagcaaaatcg--------aaaatcacaatcaaaatcgtaggattttactcaact 26021577  T
Q  241 acttttgtagaatcgatataggaaattgtaaaatcgcaat 280  Q
    |||| ||||  ||||||||| ||||| |||||||| ||||    
T  26021576 acttgtgtaacatcgatataagaaatcgtaaaatcacaat 26021537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 23172219 - 23172267
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaa 192  Q
    ||||||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  23172219 aaggttgtcaaaatcggaactttacttcaggttgaaagggaatagcaaa 23172267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 29270374 - 29270326
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatc 195  Q
    |||||||||||||||| |||| |||||||| |||||||||| |||||||    
T  29270374 gttgtcaaaatcgggattttatttcaggtcaaaagagaatatcaaaatc 29270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 30799677 - 30799635
Alignment:
Q  218 aaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    ||||||||||||||||| |||  ||||||||||||||||||||    
T  30799677 aaatcgaaggattttacacaactacttttgtagaatcgatata 30799635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 19979924 - 19979871
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatc 195  Q
    ||||||| ||||||||||||| |||  |||||||| |||||||| |||||||||    
T  19979924 ataaggtggtcaaaatcgggattttgcttcaggtcaaaagagaagagcaaaatc 19979871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 30804213 - 30804169
Alignment:
Q  219 aatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    ||||||| ||||||||| ||  |||||||||||||||||||||||    
T  30804213 aatcgaatgattttactaaactacttttgtagaatcgatatagga 30804169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 21846050 - 21846191
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||||||| ||| || |||||||||||| |||||||||||||||||||||| |||||    
T  21846050 aggttgtcaaaatcaggactttactccaggtcgaaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggactt 21846149  T
Q  245 ttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  21846150 ttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 21846191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 14074257 - 14074397
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||||  | | || ||||||| |||| |||||||||||||||||||||| |||    
T  14074257 taaggttgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggac 14074356  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaa 283  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14074357 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaa 14074397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 16125232 - 16125372
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||||| |||||||| |||||| ||||||||||||| |||||| |||||  ||| ||||||||||||||| |||||||||||||||||||||| ||| ||    
T  16125232 ggttgttaaaatcggaactttacttcaggtcgaaagggaatagtaaaattgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacatt 16125331  T
Q  246 tgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  16125332 tgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 16125372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 9351838 - 9351980
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||  ||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||| |||||||||  ||| ||||    
T  9351838 aaggttgtcaaaatcaagactttacttcaggtcgaaagcgaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgtaggattttatccaaggact 9351937  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  9351938 tttgtagaatctatataggaaattgtaaaatcacaatcaaaat 9351980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 23529010 - 23528868
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| |||||| |||||||  |||  ||| || || ||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  23529010 aaggttgtcaaaatcggaactttatttcaggttaaaaaggaacagtaagatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggact 23528911  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23528910 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 23528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 13100544 - 13100402
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| |||| |||||||| |||| |||||||| | | ||||||||||||||| |||||| ||||||||||||||| |||     
T  13100544 aaggttgtcaaaatcgggactttacttcaagtcgaaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggattttactcaaggaca 13100445  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||  ||||||||||||||||||    
T  13100444 tttgtagaatcgatataagaaatcttaaaatcgcaatcaaaat 13100402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 19009740 - 19009865
Alignment:
Q  161 gactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    ||||||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||  ||||||||| ||||||||||    
T  19009740 gactttacttcagatcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgtaaaatcgatata 19009839  T
Q  261 ggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||||||||||    
T  19009840 ggaaattgtaaaatcgcaatcaaaat 19009865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 25146543 - 25146686
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| |||||||| ||||||| ||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||||||||| | ||    
T  25146543 aaggttgtcaaaatcaggactttacttcaggttgaaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttactcaaggtct 25146642  T
Q  244 tttgtagaatcgatataggaaattgt-aaaatcgcaatcaaaat 286  Q
    || ||||||||||||||| ||||| | |||||||||||||||||    
T  25146643 ttcgtagaatcgatatagaaaattctaaaaatcgcaatcaaaat 25146686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 18304593 - 18304728
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||| | |||||||||||||  || |||||||||       ||||||||||| | ||||||||||||||||||| || ||||    
T  18304593 aaggttgtcaaaatcgggacttcacttcaggtcgaaaggaaaaagcaaaatc-------gtaaaatcgcattcaaaatcgaaggattttactaaaggact 18304685  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18304686 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 18304728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 9954816 - 9954947
Alignment:
Q  152 caaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtaga 251  Q
    ||||||||| |||||| || |||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||  || |||||||  |||    
T  9954816 caaaatcggaactttacttaaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttaccaaaggacttttcaaga 9954915  T
Q  252 atcgatataggaaattgtaaaatcgcaatcaa 283  Q
    ||| ||||||||||||||||||||||||||||    
T  9954916 atccatataggaaattgtaaaatcgcaatcaa 9954947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 17055695 - 17055836
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||| ||||| || |||||||||| | || | |||||| ||| ||||||||||||||| ||||||||||||||||||||||  |||    
T  17055695 aaggttgtcaaaatcgggtctttactt-aggtcgaaaggggattgtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaactact 17055793  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||| | ||||||||||||| |||||||||||    
T  17055794 tttgtagaatcgatacaagaaattgtaaaattgcaatcaaaat 17055836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 17869529 - 17869667
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    ||||||||||||||||| ||||||||||| |||| ||| ||||||||| |||  |||||||||||||| |||||| ||||||||||||||| |||||||     
T  17869529 ttgtcaaaatcgggactctaattcaggtcaaaagggaagagcaaaatcgggacacgtaaaatcgcaatcaaaatcaaaggattttactcaaggactttta 17869628  T
Q  248 tagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||| || ||  ||||||||||||||||||||||||    
T  17869629 tagaatcaatgtaaaaaattgtaaaatcgcaatcaaaat 17869667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 41032548 - 41032690
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| |||| |||| ||||||| ||||||||| ||||||||    | |||||||||||||| ||||||||||| |||||||||||  | |    
T  41032548 aaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaactagt 41032647  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  41032648 tttgtagaatcgatataagaaattgtaaaatcgcaattaaaat 41032690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 286
Target Start/End: Complemental strand, 32881672 - 32881532
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||| |||||||||||| |||  ||||| | ||||||||| |||||||||   | |||||||||||||| | |||||||||||||||||||||  || ||    
T  32881672 ggttttcaaaatcgggattttgcttcagattgaaagagaaaagcaaaatcgacaatcgtaaaatcgcaactgaaatcgaaggattttactcaactacgtt 32881573  T
Q  246 tgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  32881572 tgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 32881532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 17197306 - 17197423
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||| ||||||||||||||||| |||| |||||||| || |||||||||| | | |||||||||||||| ||||||||||||||||||||||| ||||||    
T  17197306 ggttatcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaaggacttt 17197405  T
Q  246 tgtagaatcgatatagga 263  Q
    ||||||||| || |||||    
T  17197406 tgtagaatcaatgtagga 17197423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 30619294 - 30619156
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||  ||||||||||||||||| |||||||||   | ||||||| ||||||  ||||||||||||||||||||||  |||    
T  30619294 aaggttgtcaaaatcgggattttc-ttcaggtcgaaagagaagagcaaaatcgacaatcgtaaa-tcgcaacaaaaatcgaaggattttactcaactact 30619197  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaa 284  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  30619196 tttgtagaatcgatatgaaaaattgtaaaatcgcaatcaaa 30619156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 9128647 - 9128755
Alignment:
Q  178 aaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgc 277  Q
    |||| ||||||||||||| ||| |||||||||| | || ||||||||||||||||||| || || |||||||| |||||||||| |||||||||||||||    
T  9128647 aaagggaatagcaaaatcgggactcgtaaaatcacgatcaaaatcgaaggattttactaaaggatttttgtaggatcgatatagaaaattgtaaaatcgc 9128746  T
Q  278 aatcaaaat 286  Q
    |||||||||    
T  9128747 aatcaaaat 9128755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 12002638 - 12002751
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    ||||||||||||||||||||||||| | |||||||| || |||||||||  ||| ||  |||||| |||| ||||||||||||||||||||| |||||||    
T  12002638 ggttgtcaaaatcgggactttaatttaagtcgaaagggagtagcaaaattgggactc--aaaatcacaataaaaatcgaaggattttactcatagacttt 12002735  T
Q  246 tgtagaatcgatatag 261  Q
    ||||||||||||||||    
T  12002736 tgtagaatcgatatag 12002751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 13276038 - 13276183
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgc------------aattaaaatcgaaggattttact 235  Q
    |||||||||||||||||||| |   ||||||||||||||||||||||||||| ||||||||||||            ||| ||||||||||||  |||||    
T  13276038 ttgtcaaaatcgggactttact---ggtcgaaagagaatagcaaaatcaggactcgtaaaatcgcaatcagaatcaaaatcaaaatcgaagga--ttact 13276132  T
Q  236 caaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
     || || |||||||||||||||||| ||||||||||||| |||||||||||    
T  13276133 taaggaattttgtagaatcgatataagaaattgtaaaattgcaatcaaaat 13276183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 8773613 - 8773505
Alignment:
Q  150 gtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgta 249  Q
    |||||||||| ||||||| || | |||||||| |||||||| |||   || ||||||||||||||||||||| ||||||||||||| || || |||||||    
T  8773613 gtcaaaatcgagactttacttaaagtcgaaagggaatagcagaat---gactcgtaaaatcgcaattaaaattgaaggattttacttaaggatttttgta 8773517  T
Q  250 gaatcgatatag 261  Q
    |||| |||||||    
T  8773516 gaattgatatag 8773505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 47786209 - 47786090
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    ||||||||||||||||| |||  || |||| ||||||||| |||||||||   | |||||||||| |||  ||||||||||||||||||||||  |||||    
T  47786209 ggttgtcaaaatcgggattttcttt-aggttgaaagagaagagcaaaatcgacaatcgtaaaatcacaaccaaaatcgaaggattttactcaactacttt 47786111  T
Q  246 tgtagaatcgatataggaaat 266  Q
    |||||||| |||||| |||||    
T  47786110 tgtagaattgatataagaaat 47786090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 12513625 - 12513490
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||| |||| |||  |||||||| |||||||| |||||||||   | | ||||||||||||  |||||| |||||||||||||||  |||    
T  12513625 aaggttgtcaaaattgggattttgcttcaggtcaaaagagaagagcaaaatcgacaattgtaaaatcgcaaccaaaatcaaaggattttactcaactact 12513526  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    | |||||       ||| |||||||||||||||||||||||||    
T  12513525 tctgtag-------ataagaaattgtaaaatcgcaatcaaaat 12513490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 27502130 - 27502224
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaa 238  Q
    ||||||||||||||||||| |||| |||| ||| | | |||||||||||| |  || || |||||| ||||| ||||||||||||||||||||||    
T  27502130 aaggttgtcaaaatcgggaatttacttcaagtcaacatagaatagcaaaaccgagactcataaaattgcaatcaaaatcgaaggattttactcaa 27502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 16434859 - 16434747
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    ||||||||||| ||| |||  |  ||||| |||| |||||||||||||   | ||||||||| ||||| |||||||||||||||||||| |  |||||||    
T  16434859 ttgtcaaaatcaggatttttctctaggtcaaaagggaatagcaaaatcgaaaatcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttg 16434760  T
Q  248 tagaatcgatata 260  Q
    |||||| ||||||    
T  16434759 tagaattgatata 16434747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 42179846 - 42179981
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| | | |||| ||| |||  |||| |||||||| ||||   | ||||||||||||||| ||||||||||||||||| || | ||||    
T  42179846 aaggttgtcaaaatcagaaatttacttcgggttaaaagggaatagcataatcgaaactcgtaaaatcgcaatcaaaatcgaaggattttattcgaggact 42179945  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||       |||||||||||||||| | ||||||||||    
T  42179946 tttgtag-------ataggaaattgtaaaaccacaatcaaaat 42179981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 9954771 - 9954822
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatc 195  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||    
T  9954771 aaggttgtcaaaatcgggactttacttaaggtcgaaagggaatagcaaaatc 9954822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 9321530 - 9321599
Alignment:
Q  164 tttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggatttta 233  Q
    |||| ||||||| |||| | |||||||||||| | | ||||||||||||||| |||||||||||||||||    
T  9321530 tttacttcaggtagaaaaaaaatagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatttta 9321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 39845061 - 39845149
Alignment:
Q  175 tcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    |||||||||||||||||||||   | | ||||||| ||||||||||| ||| ||||||||||||  | ||||||| | |||||||||||    
T  39845061 tcgaaagagaatagcaaaatcgaaaattgtaaaattgcaattaaaattgaatgattttactcaactatttttgtaaagtcgatatagga 39845149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 18228533 - 18228479
Alignment:
Q  229 ttttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaa 283  Q
    ||||||||||   ||||||||||||||||||| ||||| ||||||||||||||||    
T  18228533 ttttactcaacttcttttgtagaatcgatataagaaatcgtaaaatcgcaatcaa 18228479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 21242859 - 21242918
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    ||||||||||| ||||| ||| |||| |||||||||||  | ||||||||||||||||||    
T  21242859 tcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatcgatata 21242918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 22789480 - 22789421
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    |||||||||| |||| |||||| |||||||||||| |  |||||||||||| ||||||||    
T  22789480 tcgtaaaatcacaatcaaaatcaaaggattttactaatggacttttgtagactcgatata 22789421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 27917232 - 27917289
Alignment:
Q  229 ttttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||  ||||||||| ||| |||||| |||||||||  ||||||||||||||    
T  27917232 ttttactcaactacttttgtataattgatataagaaattgtattatcgcaatcaaaat 27917289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 12002750 - 12002790
Alignment:
Q  182 agaatagcaaaatcaggattcgtaaaatcgcaattaaaatc 222  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  12002750 agaatagcaaaatcgggactcgtaaaatcgcaatcaaaatc 12002790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 45403384 - 45403242
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||| |||||||||||||||||||| |||| |||||||| |||||||||||||  || ||||||||||||||| ||||||||||||||||||| ||||||    
T  45403384 taagcttgtcaaaatcgggactttatttcacgtcgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttacttaaagac 45403285  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  45403284 ttttgtagaatcgatataggaaattgtaaaa-cgcaatcaaaat 45403242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 7489058 - 7489200
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| |||||||| |||| ||||||||  ||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||| ||||    
T  7489058 aaggttgtcaaaatcaggactttacttcaagtcgaaaggaaatagcaaaattaggactcgtaaaatcgcaatcaaaatcggaggattttactcaaggact 7489157  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  7489158 tttgtagaatcgatatagaaaattgtaaaatcgcaatcaaaat 7489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 146 - 281
Target Start/End: Complemental strand, 5922400 - 5922265
Alignment:
Q  146 ggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |   ||| ||||||||| ||||||||||||||||||||||  |||||    
T  5922400 ggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcagaacatgtacaatcgcaatcaaaatcgaaggattttactcaagaacttt 5922301  T
Q  246 tgtagaatcgatataggaaattgtaaaatcgcaatc 281  Q
    ||||||||||||||||||||||||||||||||||||    
T  5922300 tgtagaatcgatataggaaattgtaaaatcgcaatc 5922265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 23142528 - 23142386
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||| |||||||| ||||  ||||||| ||||||||||| | | | |||||||||||||||| |||||||| ||||||| ||||| |||    
T  23142528 aaggttgtcaaaatcaggactttatttcaattcgaaagggaatagcaaaaccggtaatcgtaaaatcgcaatttaaatcgaatgattttagtcaaaaact 23142429  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  23142428 tttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 23142386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 24414061 - 24414202
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||| || |||||| |||| |||||||| ||||||||||||   || ||||||||||||||| ||||||||||||||||||||||  |     
T  24414061 taaggttgtcaaaattggaactttacttcatgtcgaaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaat 24414160  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaa 284  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  24414161 ttttgtagaatcgatataggaaattgtaaaatcctaatcaaa 24414202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 11879954 - 11879812
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||| |||||||| |||| |||||| |||||| | | ||||||||||||||| ||||||||||||||||||  ||  |||    
T  11879954 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttacctaagaact 11879855  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||| |||||||||||||| |||||||||||||||| |||||||    
T  11879854 tttatagaatcgatatagaaaattgtaaaatcgcattcaaaat 11879812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 11897370 - 11897228
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||| |||||||| |||| |||||| |||||| | | ||||||||||||||| ||||||||||||||||||  ||  |||    
T  11897370 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttacctaagaact 11897271  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||| |||||||||||||| |||||||||||||||| |||||||    
T  11897270 tttatagaatcgatatagaaaattgtaaaatcgcattcaaaat 11897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 17647351 - 17647209
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||| |||||||||| |||  ||||||||||||||||  |||||||||   | || |||||||||||| ||||||||||||||||||||||  | |    
T  17647351 aaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaatcataaaatcgcaatcaaaatcgaaggattttactcaactagt 17647252  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  17647251 tttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 17647209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 2040464 - 2040354
Alignment:
Q  153 aaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaa 252  Q
    ||||||||||||||| |||| ||||||||||| |||||||||| | | ||||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  2040464 aaaatcgggactttacttcaagtcgaaagagagtagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttactcatggacttttgtagaa 2040365  T
Q  253 tcgatatagga 263  Q
    ||||| |||||    
T  2040364 tcgatgtagga 2040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 29384087 - 29384229
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||  |||||||||||||| || || ||||||   | ||||||||||||||  ||||||||||||||||||||||  |||    
T  29384087 aaggttgtcaaaatcgggattttgcttcaggtcgaaagaaaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 29384186  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||  ||||| ||||| |||||||||||||||||||    
T  29384187 tttgtagaattaatataagaaatcgtaaaatcgcaatcaaaat 29384229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 32424631 - 32424546
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||    
T  32424631 tcgtaaaatcgcaattaaaatcgaaggattttactcaaggagttttgtagaatcgagataggaaattgtaaaatcgcaataaaaat 32424546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 15231975 - 15231835
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||| ||| ||| || |||  |||| |||||||||||| |||||||||   | |||||||||||||| |||||||| | ||||||||||||  |||    
T  15231975 aaggttgttaaattcgagattttgcttcaagtcgaaagagaagagcaaaatcgacaatcgtaaaatcgcaactaaaatcgtacgattttactcaactact 15231876  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaa 284  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  15231875 tttgtagaatcgatataaaaaattgtaaaatcgcaatcaaa 15231835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 6811173 - 6811032
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| |||||  ||||  ||||||||||| |||||||||   | ||||||||||||||  |||||||||| |||||| ||||  |||    
T  6811173 aaggttgtcaaaatcggaactttgtttcaaatcgaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaagaattttaatcaactact 6811074  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||| |||||| ||||||| |||||||||||||||||    
T  6811073 tttgtagaatagatataagaaattg-aaaatcgcaatcaaaat 6811032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 40541595 - 40541711
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| ||||||||  | |||||||||| ||| ||||||||||||||| ||||| ||| ||||||| |||| ||||    
T  40541595 aaggttatcaaaatcgggactttacttcaagtcgaaaggaagtagcaaaatcgggactcgtaaaatcgcaatcaaaattgaaagattttattcaaggact 40541694  T
Q  244 tttgtagaatcgatata 260  Q
    | |||||||||||||||    
T  40541695 tctgtagaatcgatata 40541711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 19704247 - 19704374
Alignment:
Q  159 gggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgata 258  Q
    |||| |||| |||| ||| |||| ||||||||||||| ||| ||||||||||||||| |||||| ||||| ||||||||| |||| ||||||||||||||    
T  19704247 gggattttacttcaagtccaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactcaaggactgttgtagaatcgata 19704346  T
Q  259 taggaaattgtaaaatcgcaatcaaaat 286  Q
    |  |||||  ||||||| ||||||||||    
T  19704347 tttgaaatcttaaaatcacaatcaaaat 19704374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 15761190 - 15761275
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||    
T  15761190 tcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtagaatcgatataagaagtagtaaaatcgcaatcaaaat 15761275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 27836114 - 27836181
Alignment:
Q  184 aatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtaga 251  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  27836114 aatagcaaaattaggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtaga 27836181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 16752370 - 16752256
Alignment:
Q  151 tcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtag 250  Q
    ||||||| || |||||| |||| |||||||| || |||||||||  ||| ||||||||||||||  |||||||||||||||||||||| || ||||||||    
T  16752370 tcaaaattggaactttacttcaagtcgaaagggagtagcaaaattgggactcgtaaaatcgcaaacaaaatcgaaggattttactcaaggaattttgtag 16752271  T
Q  251 aatcgatataggaaa 265  Q
    ||| ||| |||||||    
T  16752270 aattgatgtaggaaa 16752256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 15294977 - 15294881
Alignment:
Q  190 aaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| ||| || |||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||| |||||  ||||||||||| ||||||    
T  15294977 aaaatcgggactcctaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataagaaatcttaaaatcgcaagcaaaat 15294881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 15475346 - 15475250
Alignment:
Q  190 aaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| ||| || |||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||| |||||  ||||||||||| ||||||    
T  15475346 aaaatcgggactcctaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataagaaatcttaaaatcgcaagcaaaat 15475250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 22909979 - 22910118
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| | ||||  ||| |||||||||||| || ||||||   | ||||||||||||||   |||| ||||||||||| ||||  | |    
T  22909979 aaggttgtcaaaatcgg-attttacatcatgtcgaaagagaagagaaaaatcgacaatcgtaaaatcgcaaccgaaattgaaggattttattcaactatt 22910077  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaa 284  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  22910078 tttgtagaatcgatataagaaatcgtaaaatcgcaatcaaa 22910118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 17566452 - 17566313
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| | |||||| ||| |||  |||||||| |||| ||| ||||||||    | ||||||||| ||||| |||||||||| |||||||||||  |||    
T  17566452 aaggtttttaaaatcaggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactact 17566353  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaa 283  Q
    |||||||||  |||||| ||||||||||||||||||||||    
T  17566352 tttgtagaacagatataagaaattgtaaaatcgcaatcaa 17566313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 31424520 - 31424379
Alignment:
Q  142 ataaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaaga 241  Q
    |||||||||||||||||| || |||| ||||||||||||||||  |||||||||   | ||||||||||||||| ||||    ||||||||||||||  |    
T  31424520 ataaggttgtcaaaatcgagattttacttcaggtcgaaagagatgagcaaaatcgacaatcgtaaaatcgcaatcaaaa---caggattttactcaacta 31424424  T
Q  242 cttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    || |||| |||| |||||| ||||| ||||||| |||||| ||||    
T  31424423 ctcttgtggaattgatataagaaatagtaaaattgcaatccaaat 31424379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 7262074 - 7262006
Alignment:
Q  186 tagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatc 254  Q
    |||||||||| ||| ||||||||||||||| |||||  ||||||||||||||| |||||||||||||||    
T  7262074 tagcaaaatcgggactcgtaaaatcgcaatcaaaattaaaggattttactcaaggacttttgtagaatc 7262006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 24056348 - 24056483
Alignment:
Q  147 gttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggat-tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttt 245  Q
    |||||||||| || || |||  ||||||||||||| ||| ||||||||  | || || |||||| | ||| ||||||||||||||||||||||  | |||    
T  24056348 gttgtcaaaaccgagattttgcttcaggtcgaaagggaagagcaaaatt-gaatatcataaaatggtaatcaaaatcgaaggattttactcaactagttt 24056446  T
Q  246 tgtagaatcgatataggaaattgtaaaatcgcaatca 282  Q
    ||||||||| |||||  ||||  ||||||||||||||    
T  24056447 tgtagaatcaatataacaaatgttaaaatcgcaatca 24056483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 3094020 - 3094159
Alignment:
Q  145 aggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagactt 244  Q
    ||||||||||||||  || |||| || |||| ||||||| | |||||||||   | ||||||||  ||||  ||||| ||||||||||||||||  ||||    
T  3094020 aggttgtcaaaatcaagattttactttaggtggaaagagtagagcaaaatcgacaatcgtaaaactgcaacaaaaattgaaggattttactcaattactt 3094119  T
Q  245 ttgtagaatcgatataggaaattgt-aaaatcgcaatcaaaat 286  Q
    ||||||     ||||| |||||||| |||||||||||||||||    
T  3094120 ttgtag---gcatataagaaattgtaaaaatcgcaatcaaaat 3094159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 8582314 - 8582255
Alignment:
Q  227 gattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||  ||||||||||||| |||||| ||||| |||||||  ||||||||||    
T  8582314 gattttactcaactacttttgtagaattgatataagaaatcgtaaaattacaatcaaaat 8582255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 26879864 - 26879778
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggatt 230  Q
    |||||||||||| ||| || |||| ||||||| ||||| ||  ||||||||||  | ||||||||||||||| ||||| || |||||    
T  26879864 aaggttgtcaaagtcgtgattttagttcaggttgaaagggatcagcaaaatcaaaaatcgtaaaatcgcaatcaaaattgatggatt 26879778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 56200 - 56342
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||||||  ||    |||||||||||| |||||||||||||||||||||| ||||    
T  56200 aaggttgtcaaaatcgagactttacttcaggtcgaaagggaatagcaaaatcgagacatctaaaatcgcaatcaaaatcgaaggattttactcaaggact 56299  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  56300 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 56342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 20064077 - 20063935
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||| ||||| ||||||| ||||| |||||||||||||  || ||||||||||||||| |||||||||| ||||||||||| ||||    
T  20064077 aaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggact 20063978  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  20063977 tttgtagaatcgatataggaaattgtaaaatcgcaaccaaaat 20063935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 1405137 - 1404995
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||| |||||||||| ||||| |||| ||||||||||||| | | || |||||||||||| ||||||||||||||||||||||  |||    
T  1405137 aaggttgtcaaaatcgagactttaatttaggtcaaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggattttactcaagaact 1405038  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  1405037 tttgtagaatcgatataggaaattgtaaaattgcaatcaaaat 1404995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 19262091 - 19262233
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||| ||||||| |||||| |||| |||||| | ||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||| ||||    
T  19262091 aaggttgtcgaaatcggaactttacttcaagtcgaatgggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaagattttactcaaggact 19262190  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  19262191 tttgtagaatcgatataagaaattgtaaaatcgcaatcaaaat 19262233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 30433170 - 30433027
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||||||||| ||| ||||||||||||   ||||| |||||| ||| || |||||||||||| ||||||||| |||||||||||| |||    
T  30433170 taaggttgtcaaaatcgggacattacttcaggtcgaaaagcaatagaaaaatcgggactcataaaatcgcaatcaaaatcgaatgattttactcaaggac 30433071  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  30433070 ttttatagaatcgatataggaaattgtaaaatcgcaatcaaaat 30433027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 31237755 - 31237893
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    ||||||||||| |||||||| ||||| || |||| |||||| |||||| ||| ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  31237755 ttgtcaaaatcaggactttacttcagttcaaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttg 31237854  T
Q  248 tagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    || ||||||||||| |||||||||||| |||||||||||    
T  31237855 taaaatcgatatagaaaattgtaaaattgcaatcaaaat 31237893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 21869096 - 21869212
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||| |||||||||||||||||| |||| |||||||| |||||| |||||| ||| || |||||||||||||||||||||||||||||| |||| ||||    
T  21869096 aaggtcgtcaaaatcgggactttacttcaagtcgaaagggaatagaaaaatcgggactcttaaaatcgcaattaaaatcgaaggattttattcaatgact 21869195  T
Q  244 tttgtagaatcgatata 260  Q
    |||||||||||||||||    
T  21869196 tttgtagaatcgatata 21869212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 25538920 - 25539062
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||| ||||||  |||||||||||| |||||| |||||| ||  ||||||||||||||| |||||  |||||||||||| ||  |||    
T  25538920 aaggttgtcaaaatcggtactttacatcaggtcgaaagggaatagaaaaatcgggtctcgtaaaatcgcaatcaaaattaaaggattttactgaactact 25539019  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||||||||  |||||||||||| |||||||||||    
T  25539020 tttgtagaatcgatataaaaaattgtaaaattgcaatcaaaat 25539062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 27523881 - 27523990
Alignment:
Q  154 aaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaat 253  Q
    |||||||||||||| |||| |||||||| || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  27523881 aaatcgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaat 27523980  T
Q  254 cgatatagga 263  Q
    |||| |||||    
T  27523981 cgatgtagga 27523990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 974693 - 974573
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggat-tcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||| |||| |||||||||||| |||| |||||||| || |||||||||| | |  ||||||||||||||| |||||||||||||||||||||| |||    
T  974693 aaggttatcaatatcgggactttacttcaagtcgaaagggagtagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 974594  T
Q  243 ttttgtagaatcgatatagga 263  Q
    |||||||||||||||||||||    
T  974593 ttttgtagaatcgatatagga 974573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 20034004 - 20034110
Alignment:
Q  151 tcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtag 250  Q
    ||||||||||||||||| |||| |||||||| || ||||||||||  || ||||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  20034004 tcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaaggacttttgtag 20034103  T
Q  251 aatcgat 257  Q
    |||||||    
T  20034104 aatcgat 20034110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 19245943 - 19245824
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||||||||||||||| |||  |||| || ||||| ||||||||||||||  | ||||||||||||||| |||||| |||||||||||| ||  |||    
T  19245943 aaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaactact 19245844  T
Q  244 tttgtagaatcgatatagga 263  Q
    ||||||||||||||||||||    
T  19245843 tttgtagaatcgatatagga 19245824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 7302136 - 7302023
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| || ||| | |  |||||||||| ||| ||||||||| ||||| |||||||||||||||||||||| ||||    
T  7302136 aaggttatcaaaatcgggactttacttcaagttgaaggggggtagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggact 7302037  T
Q  244 tttgtagaatcgat 257  Q
    ||||||||||||||    
T  7302036 tttgtagaatcgat 7302023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 16767079 - 16766997
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||||||| ||||| ||||||||||||||||  |||||| ||||||||||||| ||||| |||||||||||||||||||    
T  16767079 taaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatcgatataagaaatcgtaaaatcgcaatcaaaat 16766997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 8428577 - 8428440
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    |||||||||||||||||||| |||  || |||||||||| |||||| |||||||  | |  |||||||||||| |||||||||||||||| |||||  |     
T  8428577 taaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaactat 8428478  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaat 280  Q
    |||||||||||| ||||   |||| |||||||||||||    
T  8428477 ttttgtagaatcaatatcaaaaatcgtaaaatcgcaat 8428440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 15588655 - 15588771
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattg 268  Q
    ||||||||||||||||| || ||||||   | || |||||||||||  ||||||||||||||||||||||  ||||  |||| ||||||||| ||||||     
T  15588655 ttcaggtcgaaagagaaaagaaaaatcgacaatcataaaatcgcaaccaaaatcgaaggattttactcaattacttc-gtaggatcgatataagaaatta 15588753  T
Q  269 taaaatcgcaatcaaaat 286  Q
    ||||||||||||||||||    
T  15588754 taaaatcgcaatcaaaat 15588771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 35565755 - 35565874
Alignment:
Q  170 tcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggatttta---ctcaaagacttttgtagaatcgatataggaaat 266  Q
    |||||||||| ||||| |||||||||   | | |||||||||||| ||||||||||||||||||   |||||  |||||||||||||||||||| |||||    
T  35565755 tcaggtcgaaggagaagagcaaaatcgataattgtaaaatcgcaactaaaatcgaaggattttattactcaactacttttgtagaatcgatataagaaat 35565854  T
Q  267 tgtaaaatcgcaatcaaaat 286  Q
      ||||||| ||||||||||    
T  35565855 cataaaatcacaatcaaaat 35565874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 34578210 - 34578124
Alignment:
Q  177 gaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    ||||| || |||||||||| ||| || |||||||||||| ||||| |||||||||||||||  |||||||||||||||||| |||||    
T  34578210 gaaagggagtagcaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactcatggacttttgtagaatcgatgtagga 34578124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 13502505 - 13502590
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||| ||| ||||| ||||||| ||| ||||  | |||||||||||| ||||| ||||| |||||||||||||||||||    
T  13502505 tcgtaaaatcgtaatcaaaattgaaggatattagtcaactatttttgtagaatctatataagaaatcgtaaaatcgcaatcaaaat 13502590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 27407088 - 27407003
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||| |||||||| |||||| ||| |||||||||||  ||||||| | |||| ||||| |||||  ||||||||||||||||||    
T  27407088 tcgtaatatcgcaatcaaaatccaagaattttactcaactacttttggataatcaatataagaaatcataaaatcgcaatcaaaat 27407003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 29661166 - 29661093
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaat 274  Q
    |||||||| |||||||||||||||||| ||||| | ||  |||||||||| ||||||||| ||||| |||||||    
T  29661166 tcgtaaaaccgcaattaaaatcgaaggtttttattaaactacttttgtagtatcgatataagaaatcgtaaaat 29661093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 36430145 - 36430088
Alignment:
Q  201 tcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgata 258  Q
    ||||||||||||||| ||||||||||||| ||||||||  | ||||||||||||||||    
T  36430145 tcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtagaatcgata 36430088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 23863289 - 23863352
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggatttt 232  Q
    |||| |||||||||||| ||||||||||  ||||||||||||||||  |||||||| |||||||    
T  23863289 ttcaagtcgaaagagaaaagcaaaatcaacattcgtaaaatcgcaaccaaaatcgatggatttt 23863352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 1690510 - 1690645
Alignment:
Q  144 aaggttgtcaaaatcgggactttaa-ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||||||| |||   ||||||| ||||||||| ||||||||||        | ||||||||  |||| ||||||| |||||| ||  ||    
T  1690510 aaggttgtcaaaatcgggatttttgcttcaggttgaaagagaagagcaaaatca--------acaatcgcaaccaaaagcgaaggaatttactgaactac 1690601  T
Q  243 ttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||  |||||||||| ||| | |||||||||||||||||||    
T  1690602 ttttgttaaatcgatataagaattcgtaaaatcgcaatcaaaat 1690645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 27749288 - 27749396
Alignment:
Q  148 ttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttg 247  Q
    ||||||||||| | | |||| ||||| |||||||  | ||| ||||| |  | |||||||||||||||  |||| ||| || ||||||||| || |||||    
T  27749288 ttgtcaaaatcagtattttacttcagatcgaaaggaattagtaaaatgacaaatcgtaaaatcgcaatctaaattgaatgagtttactcaaggatttttg 27749387  T
Q  248 tagaatcga 256  Q
    |||||||||    
T  27749388 tagaatcga 27749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 8795 - 8653
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||| ||||||| | | ||||||||||||||| ||||| ||||||||||||||||  | |    
T  8795 aaggttctcaaaatcgggactttacttcaggtcgaaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttactcaagtatt 8696  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  8695 ttcgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 8653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 14701 - 14820
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||| ||||| |||| |||||||  || |||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  14701 aaggttatcaaaatcggggctttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttattcaaagact 14800  T
Q  244 tttgtagaatcgatatagga 263  Q
    |||||||||||||| |||||    
T  14801 tttgtagaatcgatgtagga 14820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 76084 - 76202
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| |||  ||||||||  |||||||||  | ||| ||||||||| ||||| || ||||||||||||||||||||||||    
T  76084 aaggttgtcaaaatcgggactttacttccagtcgaaaggaaatagcaaacccgggactcgtaaaattgcaat-aagatcgaaggattttactcaaagact 76182  T
Q  244 tttgtagaatcgatatagga 263  Q
    |||||||||||||| |||||    
T  76183 tttgtagaatcgatgtagga 76202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 38302 - 38420
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||||||||||||||||||||| |||| ||||||||  |||||||||||| ||| ||||||||| |||| | | ||||||||||||||||||  ||||    
T  38302 aaggttgtcaaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgggactcgtaaaattgcaa-tcagatcgaaggattttactcatggact 38400  T
Q  244 tttgtagaatcgatatagga 263  Q
    |||||||||||||| |||||    
T  38401 tttgtagaatcgatgtagga 38420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 7269 - 7372
Alignment:
Q  183 gaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatca 282  Q
    |||||||||||||  || | ||||||||| ||| ||||||||||||||||||||||  |||||||| |||| |||||||||||||||| |||||||||||    
T  7269 gaatagcaaaatcgagacttgtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgttgaatagatataggaaattgtataatcgcaatca 7368  T
Q  283 aaat 286  Q
    ||||    
T  7369 aaat 7372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2084 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 182 - 81
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| ||||||||||||||||| |||| ||| |||| || |||||||||| ||| ||||||||| | |||||||||||||||||||||||||| ||||    
T  182 aaggttatcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgggactcgtaaaattgtaattaaaatcgaaggattttactcaaggact 83  T
Q  244 tt 245  Q
    ||    
T  82 tt 81  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 4 - 120
Alignment:
Q  169 ttcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattg 268  Q
    ||||||||||| ||||| |||||||||   | ||||||||||| ||  ||||||||||||||||||||||  ||||| |||||||||||||| |||||||    
T  4 ttcaggtcgaatgagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaactacttt-gtagaatcgatataagaaattg 102  T
Q  269 taaaatcgcaatcaaaat 286  Q
    ||||||| ||||||||||    
T  103 taaaatctcaatcaaaat 120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 8794 - 8876
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    |||||||| ||| ||||||||||||||||||||||  ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  8794 taaaatcgtaatcaaaatcgaaggattttactcaactacttttgtagaatagatataagaacttgtaaaatcgcaatcaaaat 8876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 61089 - 61231
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    ||||||| ||||||||||| |||  |||||||| |||||||| || |||||    | |||||||||| |||| |||||||||| |||||||| ||  |||    
T  61089 aaggttgccaaaatcgggattttgcttcaggtcaaaagagaaaagtaaaatttaaaatcgtaaaatcacaatcaaaatcgaagaattttacttaactact 61188  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||||||||||| ||||| ||||||||| || ||||||    
T  61189 tttgtagaatcgatatatgaaatcgtaaaatcgtaaccaaaat 61231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 48497 - 48579
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||| |||| ||||||||||||||||||| ||  |||||||||||||||||| | ||| | |||||||||| ||||||||    
T  48497 taaaatctcaatcaaaatcgaaggattttacttaactacttttgtagaatcgataaaagaagtcgtaaaatcgcgatcaaaat 48579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 1024 - 885
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| | |||||| ||| |||  |||||||| |||| ||| ||||||||    | ||||||||| ||||| |||||||||| |||||||||||  |||    
T  1024 aaggtttttaaaatcaggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactact 925  T
Q  244 tttgtagaatcgatataggaaattgtaaaatcgcaatcaa 283  Q
    |||||||||  |||||| ||||||||||||||||||||||    
T  924 tttgtagaacagatataagaaattgtaaaatcgcaatcaa 885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 93539 - 93622
Alignment:
Q  203 gtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatataggaaattgtaaaatcgcaatcaaaat 286  Q
    ||||||||| ||| ||||||||||||||||| ||||  ||||||||||||||||||||  |||| |||||||||||||||||||    
T  93539 gtaaaatcgtaatcaaaatcgaaggattttattcaactacttttgtagaatcgatataataaatcgtaaaatcgcaatcaaaat 93622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 145943 - 145826
Alignment:
Q  143 taaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagac 242  Q
    ||||||||||||||| | || |||  |||||||||||||| |||||  |||||   | ||||||||| ||||| |||||||||||||||||||||   ||    
T  145943 taaggttgtcaaaattgagattttgcttcaggtcgaaagaaaatagttaaatcgaaaatcgtaaaatagcaatcaaaatcgaaggattttactcacttac 145844  T
Q  243 ttttgtagaatcgatata 260  Q
    ||||||||||||||||||    
T  145843 ttttgtagaatcgatata 145826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 132942 - 133009
Alignment:
Q  196 aggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    |||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  132942 aggactcgtaaaatcgcaatcaaaatcgaaggattttcctcaaggacttttgtagaatcgatgtagga 133009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 8510 - 8391
Alignment:
Q  144 aaggttgtcaaaatcgggactttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagact 243  Q
    |||||| |||||||||||| |||| || | |||||||| || ||| |||||  ||| || |||||| ||| | |||||||||||||||||||||| || |    
T  8510 aaggttatcaaaatcgggagtttactttaagtcgaaagggagtagtaaaattgggactcataaaattgcagtcaaaatcgaaggattttactcaaggagt 8411  T
Q  244 tttgtagaatcgatatagga 263  Q
    | |||||||| |||||||||    
T  8410 tgtgtagaattgatatagga 8391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 142923 - 142864
Alignment:
Q  204 taaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||    
T  142923 taaaatcgcaattaaaattgaaggattttactcaaggagttttgtagaatagatatagga 142864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 24722 - 24621
Alignment:
Q  162 actttaattcaggtcgaaagagaatagcaaaatcaggattcgtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatag 261  Q
    |||||| |||| |||||||| || |||||||||| ||| ||||||||| | ||| |||||| || |||||||||||||   ||||||||||||||| |||    
T  24722 actttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaattgtaatcaaaatcaaaagattttactcaaatttttttgtagaatcgatgtag 24623  T
Q  262 ga 263  Q
    ||    
T  24622 ga 24621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 33233 - 33176
Alignment:
Q  203 gtaaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatata 260  Q
    ||||||||||||| |||||||||| ||||||||||   ||||||||||||||||||||    
T  33233 gtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatata 33176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 626 - 568
Alignment:
Q  205 aaaatcgcaattaaaatcgaaggattttactcaaagacttttgtagaatcgatatagga 263  Q
    ||||||||||||||||||||  ||| |||||| | |||||||||||||| |||||||||    
T  626 aaaatcgcaattaaaatcgagtgatgttactcgaggacttttgtagaattgatatagga 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University