View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_57 (Length: 283)
Name: NF3162_low_57
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 3693200 - 3693334
Alignment:
| Q |
83 |
tgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaaa |
182 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
3693200 |
tgattaattgtagcaacagtttatgtaacttttaataatgtctt--aaattatgtttattggaatattatttagattatgctatttttacgcataccaaa |
3693297 |
T |
|
| Q |
183 |
aaggttattcttattttaattgaattatagattatat |
219 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
3693298 |
aaggttattcttattttaattgaattatagagtatat |
3693334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 3685518 - 3685619
Alignment:
| Q |
82 |
atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaa |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685518 |
atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaa |
3685617 |
T |
|
| Q |
182 |
aa |
183 |
Q |
| |
|
|| |
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|
| T |
3685618 |
aa |
3685619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 3702975 - 3703107
Alignment:
| Q |
82 |
atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaa |
181 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
3702975 |
atgattaattgtggcaacagtttatgtaacttttaataatgtctc--aaattctgtttattgggatatt---tagattattctatttttatgcataccaa |
3703069 |
T |
|
| Q |
182 |
aaaggttattcttattttaattgaattatagattatat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3703070 |
aaaggttattcttattttaattgaattatagataatat |
3703107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 3651569 - 3651479
Alignment:
| Q |
34 |
cagagccatctttcaaccctaggtgatccccagtttggaagacatctaatgattaattgtagcaacagtttatgtaacttttaataatgtc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3651569 |
cagagccatctttcaaccctaggtgatccccagtttggaagacatctaatgattaattgtagcaacagtttatgtaacttttaataatgtc |
3651479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 3685914 - 3685981
Alignment:
| Q |
216 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgc |
283 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3685914 |
atataagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgc |
3685981 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 3700673 - 3700793
Alignment:
| Q |
97 |
aacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatatt-atttagatta-----ttctatttttatgcataccaaaaaggttat |
190 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| |
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|
| T |
3700673 |
aacagtttatgtaactttt--taatgtctc--aaattatgtttattggaatatttatttagattaaactattctatttttatgtataccaataaggttat |
3700768 |
T |
|
| Q |
191 |
tcttattttaattgaattatagatt |
215 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
3700769 |
tcttattttaattgaattatagatt |
3700793 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 3705909 - 3706012
Alignment:
| Q |
85 |
attaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattat-----ttagattattctatttttatgcatacc |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||| ||| ||||| |
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|
| T |
3705909 |
attaattgtagcaacagtttatgtaacttttaataatg--tctcaacttctgtttattggaatgttatttagattagattattctattttcatgtatacc |
3706006 |
T |
|
| Q |
180 |
aaaaag |
185 |
Q |
| |
|
|||||| |
|
|
| T |
3706007 |
aaaaag |
3706012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 3694967 - 3695027
Alignment:
| Q |
82 |
atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattgga |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
3694967 |
atgattaattgtagcaacagtttatgtaacttttaataatgtctc---aaatctgtttattgga |
3695027 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 3700509 - 3700556
Alignment:
| Q |
33 |
tcagagccatctttcaaccctaggtgatccccagtttggaagacatct |
80 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3700509 |
tcagagtcatcttttaaccctaggtgatccccagtttggaagacatct |
3700556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 3675510 - 3675554
Alignment:
| Q |
239 |
taaaggataatgatatttgcatcgaagaatatagatcacgaacgc |
283 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||||| |
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|
| T |
3675510 |
taaaggttaatgatatttgtagcgaagaatatagatcacgaacgc |
3675554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 3693681 - 3693721
Alignment:
| Q |
216 |
atataagatgagagggccgaaaataaaggataatgatattt |
256 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||||||| |
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|
| T |
3693681 |
atataagacgcgagggccgaaattaaaggataatgatattt |
3693721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 1287457 - 1287426
Alignment:
| Q |
181 |
aaaaggttattcttattttaattgaattatag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1287457 |
aaaaggttattcttattttaattgaattatag |
1287426 |
T |
|
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