View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_58 (Length: 281)
Name: NF3162_low_58
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 27443374 - 27443128
Alignment:
| Q |
20 |
attaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgatt |
119 |
Q |
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| T |
27443374 |
attaatgtagttgagtagtgatatatataccatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggcttgatg |
27443275 |
T |
|
| Q |
120 |
aatcttgttttgcaggcttgtgaatattttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
27443274 |
aatcttgttttgcaggcttgtgaatattttctctttcgattgtagtttgctgtttgaaggtgattgatgaagttgttctctgcttcatgacataaatata |
27443175 |
T |
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| Q |
220 |
tagccttcttttatcgatggtttgaatcttaattcaacgaatggtat |
266 |
Q |
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| T |
27443174 |
tagccttcttctatcgatggtttgaatcttaattcaacgaatggtat |
27443128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 27221494 - 27221668
Alignment:
| Q |
47 |
taccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggctt--gattaatcttgttttgcaggcttgtgaat |
144 |
Q |
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| T |
27221494 |
taccatagaagaggaatgcaaaactaaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaat |
27221593 |
T |
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| Q |
145 |
attttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatata |
219 |
Q |
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| T |
27221594 |
attttctctttcgattgtagtttgctgtttgtaagtgattgatgaagttgttctctgcttcgtgacatatatata |
27221668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 270
Target Start/End: Original strand, 27433251 - 27433495
Alignment:
| Q |
31 |
tgagtagtgatatatat-accatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttt |
129 |
Q |
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|||||| |||||||||| ||||||||| |||||||| || |||| ||||| ||||||| | ||| | ||||||||||||| ||||||||||||||||| |
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| T |
27433251 |
tgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaatcttgttt |
27433350 |
T |
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| Q |
130 |
tgcaggcttgtg-----------aatattttctctttcgattgtag-tttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatata |
217 |
Q |
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| T |
27433351 |
tgcaggcttgtgaatattggtgcaatattttctctttcaattgtagtttttctgttt---ggtgattgatgaaattgctctctgcttcttgac--atata |
27433445 |
T |
|
| Q |
218 |
tatagccttcttttatcgatggtttgaatcttaattcaacgaatggtattcat |
270 |
Q |
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| T |
27433446 |
tatagcctac---tatggatggtttgaatcttaattcaacgaatggtattcat |
27433495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 27215532 - 27215633
Alignment:
| Q |
47 |
taccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaat |
144 |
Q |
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|||| ||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27215532 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaat |
27215631 |
T |
|
| Q |
145 |
at |
146 |
Q |
| |
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|| |
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|
| T |
27215632 |
at |
27215633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 27208270 - 27208352
Alignment:
| Q |
146 |
ttttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatatagccttct |
228 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
27208270 |
ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatatatagccttct |
27208352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 27208156 - 27208225
Alignment:
| Q |
20 |
attaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
89 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
27208156 |
attaatgtagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 27215653 - 27215758
Alignment:
| Q |
153 |
tttcgattgtagtttgctgtttgaaggttatt-gatgaagttgttctctgcttcatgacatatatatatagccttcttttatcgatggtttgaatcttaa |
251 |
Q |
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|
|||||||||||||||| ||| ||||||| ||| |||||||||| |||||||||| | ||||||||||| | || ||||||||||||||||| | | |
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| T |
27215653 |
tttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttctttacatatatataga-----tttctatcgatggtttgaatcgtca |
27215747 |
T |
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| Q |
252 |
ttcaacgaatg |
262 |
Q |
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||||||||||| |
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| T |
27215748 |
ttcaacgaatg |
27215758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
44 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
89 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
44 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
89 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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