View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_6 (Length: 552)
Name: NF3162_low_6
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 14083256 - 14083771
Alignment:
| Q |
18 |
gtatataatttagagcgttcatagacactttagaattacttgtgcaatcatattttattcttcgagtttaagttttgcaggatcccttaacacaagatct |
117 |
Q |
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| T |
14083256 |
gtatataatttagagtgttcatagacactttagaattacttgtgcaatcatattttattcttcgagtttaagttttgcaggatcccttaacacaagatct |
14083355 |
T |
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| Q |
118 |
cacaaaatttatatcagttatgatggatatatcatatatggattagaaagtaactatagagtaaatttttgtttcataatactacgtgtaattgaaaaaa |
217 |
Q |
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| T |
14083356 |
cacaaaatttatatcaggtaggatggatatatcatatatggattggaaagtaattatagagtaaatttttgtttcataatactatgtgtaattgaaaaaa |
14083455 |
T |
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| Q |
218 |
tttcctcccccctcgttctcaaaatggtttccacttgcacaatcgagacgggatttgtcaagattgatttataagaagtttaacatcttatactaaactt |
317 |
Q |
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| T |
14083456 |
tttcctcccccctcgttctcaaaatggtttccacttgcacaatccagacgggatttgtcaagattgatttataagaagtttaacatcttatactaaactt |
14083555 |
T |
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| Q |
318 |
gaaacaaaatttttacagctctgattgacaattccagagttgtaaaatgcatttttcaagtaaaattggagaagtaaaatgcaatttttcaatattcttt |
417 |
Q |
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| T |
14083556 |
gaaacaaaatttttacagctctgattgacaattccagagttgtaaaatgcatttttcaagtaaaattggagaagtaaaatgcaa-ttttcaatattcttt |
14083654 |
T |
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| Q |
418 |
tagtccgttgattgtttcatttatcctcgtagaacactaacactagcattacatatactttcattcctatgcaatgaaacgatttattctttatattaat |
517 |
Q |
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| T |
14083655 |
tagtccgttgattgtttcatttatcctcgtagaacactaacactagcattacatatactttcattcctatgcaatgaaacgatttattctttatattaat |
14083754 |
T |
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| Q |
518 |
gcttaaaatacaaaaat |
534 |
Q |
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| T |
14083755 |
gcttaaaatacaaaaat |
14083771 |
T |
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