View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_60 (Length: 280)
Name: NF3162_low_60
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 36918193 - 36917929
Alignment:
| Q |
1 |
tgaacaatttcgttacataaggtcaggcttgaaggacaaaataactcagactagttagttacaacacaacaggcagaagtaaatgaaagtaaggtcatga |
100 |
Q |
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| T |
36918193 |
tgaacaatttcgttacataaggtcaggcttgaaggacaaaataactcagactagttagttacaacacaacaggcagaagtaaatgaaagtaaggtcatga |
36918094 |
T |
|
| Q |
101 |
ttgaggccacttgtcctaaaaaactgagtatttttcataagagtggccgttcatctctctgagtttccactttctttaggtacaaaactacccaaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918093 |
ttgaggccacttgtcctaaaaaactgagtatttttcataagagtggccgttcatctctctgagtttccactttctttaggtacaaaactacccaaaatta |
36917994 |
T |
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| Q |
201 |
gcctattatcttcacatcatcatttaactgtccccaactagatgttgacatttcataacaaaact |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36917993 |
gcctattatcttcacatcatcatttaactgtccccaactagatgttgacatttcataacaaaact |
36917929 |
T |
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