View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_7 (Length: 545)
Name: NF3162_low_7
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 1687406 - 1686886
Alignment:
| Q |
19 |
aaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
1687406 |
aaagaactaattctcctgattttttacggacatttctcttatttgcctttcgatgtatttttttatttgaggaaataatcttcttgattatagttttcat |
1687307 |
T |
|
| Q |
119 |
ttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaaggg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687306 |
ttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaaggg |
1687207 |
T |
|
| Q |
219 |
ttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattctcaacaagacata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687206 |
ttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattctcaacaagacata |
1687107 |
T |
|
| Q |
319 |
aagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcatatacattagttatggttgaactctcaaatccactcttctcaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687106 |
aagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcagatacattagttatggttgaactctcaaatccactcttctcaat |
1687007 |
T |
|
| Q |
419 |
ctttgtattgttgaaattttccaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcagaagtcttagcactctttcta |
518 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1687006 |
ctttgtattgttgaaatttaacaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcacaagtcttagcactctttcta |
1686907 |
T |
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| Q |
519 |
acataacttttcctatgcttc |
539 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
1686906 |
acataacttttcctctgcttc |
1686886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 41918527 - 41918017
Alignment:
| Q |
19 |
aaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttcat |
118 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| | ||| |||||||||| |||||||||| || | |||| |
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| T |
41918527 |
aaagaactaattcccctgactttttgcggacatctctcttatttttctttcgatgcatttttttcttcaaggaaataattttcttgattaaagatctcat |
41918428 |
T |
|
| Q |
119 |
ttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaaggg |
218 |
Q |
| |
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|||||||||| |||||| ||||||||||| | | || | | |||||||||| |||||| ||| |||| |||||||||| ||||||||||| ||| |
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| T |
41918427 |
ttttcggctggttgtag---aatttccttctgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctctggccctttgcaaacggg |
41918331 |
T |
|
| Q |
219 |
ttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattctcaacaagacata |
318 |
Q |
| |
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|||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| ||||||| |
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| T |
41918330 |
ggcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattggaaaattttgtccaattctcctactctcaactagacata |
41918231 |
T |
|
| Q |
319 |
aagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcatatacattagttatggttgaactctcaaatccactcttctcaat |
418 |
Q |
| |
|
|| ||||||||||| |||||| || |||||||||| ||||||||| |||| || || |||||||||| |||||| | |||||||||| || | || |
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| T |
41918230 |
aacctgacaatgaagacattttctgataactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataaac |
41918131 |
T |
|
| Q |
419 |
ctttgtattgttgaaattttccaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcagaagtcttagcactctttcta |
518 |
Q |
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||||| || ||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| | |||| ||| |||||||| |
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| T |
41918130 |
ctttgaatctttgaaatattccaaaaatgggaaagagatggaatctccatcatcgacaaataatggcttttgacactcaggaatcttggcagtctttcta |
41918031 |
T |
|
| Q |
519 |
acataacttttcct |
532 |
Q |
| |
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|||||||||||||| |
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|
| T |
41918030 |
acataacttttcct |
41918017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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