View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_71 (Length: 255)
Name: NF3162_low_71
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 5213796 - 5214021
Alignment:
| Q |
15 |
gaaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaagtattggagcacacattca |
114 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||| ||||| ||| ||||| | |
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| T |
5213796 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatcacaaagcattggtgcaaacattga |
5213895 |
T |
|
| Q |
115 |
aactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactttt |
214 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||| | | |||||||||||||||||||||||| |
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| T |
5213896 |
aactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctactttt |
5213995 |
T |
|
| Q |
215 |
ctttcatatcaatatagtttgatatt |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
5213996 |
ctttcatatcaatatagtttgatatt |
5214021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 4842620 - 4842395
Alignment:
| Q |
16 |
aaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaa---gtattggagcacacatt |
112 |
Q |
| |
|
||||||||||||||||| ||||||| | | || ||| ||||||||||| |||||||| ||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
4842620 |
aaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacatt |
4842521 |
T |
|
| Q |
113 |
caaactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactt |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842520 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactt |
4842421 |
T |
|
| Q |
213 |
ttctttcatatcaatatagtttgata |
238 |
Q |
| |
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||||||| |||||||||| ||||||| |
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| T |
4842420 |
ttctttcttatcaatataatttgata |
4842395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 5159988 - 5160213
Alignment:
| Q |
15 |
gaaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaag---tattggagcacacat |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| || |||||| | ||||||||||| |||||| ||| |||||||| | |||| |
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| T |
5159988 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacat |
5160087 |
T |
|
| Q |
112 |
tcaaactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctact |
211 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
5160088 |
tgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctact |
5160187 |
T |
|
| Q |
212 |
tttctttcatatcaatatagtttgat |
237 |
Q |
| |
|
|||||||| |||||||| | |||||| |
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|
| T |
5160188 |
tttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 5182236 - 5182464
Alignment:
| Q |
15 |
gaaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaagtattggagcacacattca |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| ||| | ||| | ||||| | |||| | |
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|
| T |
5182236 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagtggagttctcattga |
5182335 |
T |
|
| Q |
115 |
aactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactttt |
214 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
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|
| T |
5182336 |
aactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctactttt |
5182435 |
T |
|
| Q |
215 |
ctttcatatcaatatagtttgatattctt |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
5182436 |
ctttcatatcaatataatttgatattctt |
5182464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 5195630 - 5195853
Alignment:
| Q |
15 |
gaaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaag---tattggagcacacat |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| || |||||| | ||||||||||| |||||| ||| |||||||| | |||| |
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|
| T |
5195630 |
gaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacat |
5195729 |
T |
|
| Q |
112 |
tcaaactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctact |
211 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | | |||||||||||||||||||| |
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|
| T |
5195730 |
tgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctact |
5195829 |
T |
|
| Q |
212 |
tttctttcatatcaatatagtttg |
235 |
Q |
| |
|
||||||||||||||||||| |||| |
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| T |
5195830 |
tttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 4857095 - 4856867
Alignment:
| Q |
15 |
gaaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaagtattggagcacacattca |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||| ||| | ||| | ||||| | |||| | |
|
|
| T |
4857095 |
gaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagtggagttctcattga |
4856996 |
T |
|
| Q |
115 |
aactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactttt |
214 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
4856995 |
aactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctactttt |
4856896 |
T |
|
| Q |
215 |
ctttcatatcaatatagtttgatattctt |
243 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |
|
|
| T |
4856895 |
ctttcatatcaatataatttggtattctt |
4856867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 5172905 - 5173130
Alignment:
| Q |
16 |
aaattacatgcaaggattattttcattgagcactttagctaatcactcaaatcttcaagttctatatatctcatcacaaa---gtattggagcacacatt |
112 |
Q |
| |
|
||||||||||||||||| ||||||| | | || ||| ||||||||||| |||||||| |||| |||| ||||| ||| | | ||||| ||||||| |
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|
| T |
5172905 |
aaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacatt |
5173004 |
T |
|
| Q |
113 |
caaactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactt |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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|
| T |
5173005 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
5173104 |
T |
|
| Q |
213 |
ttctttcatatcaatatagtttgata |
238 |
Q |
| |
|
||||||| |||||||||| ||||||| |
|
|
| T |
5173105 |
ttctttcttatcaatataatttgata |
5173130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 7142256 - 7142390
Alignment:
| Q |
100 |
tggagcacacattcaaactgaaaaatcaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacatgaagaaaggaagt |
199 |
Q |
| |
|
||||| |||| || |||||||||| ||||||||||||||| ||||||| | | |||| || ||| ||||||||||| ||||||| | ||||||| | |
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|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
200 |
gtcattcctacttttctttcatatcaatatagtttg |
235 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| |||| |
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|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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