View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_72 (Length: 250)
Name: NF3162_low_72
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41066520 - 41066759
Alignment:
| Q |
1 |
ttaataaacatctatcgaaaccaatgaaatacctaaatattaacttgagtattctcttgcaatatcaagacgaatgttatcaaatagcggccattgcaat |
100 |
Q |
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| T |
41066520 |
ttaataaacatctatcgaaaccaatgaaatacctaaatattaacttgagtagtctcttgcaatatcaagacgaatgttatcaaatagcggccattgcaat |
41066619 |
T |
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| Q |
101 |
tagcaacattaaaatgctatagcgttgcagtatatgaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatagtggctagcg |
200 |
Q |
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| T |
41066620 |
tagcaacactaaaatgctatagcgttgcagtatatgaacatattgttattgttccatgatacactaattagtacacattgctgtcaaatagtggctagcg |
41066719 |
T |
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| Q |
201 |
tagcagaacttgaaccaactactatttttcgcgatctgtg |
240 |
Q |
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| T |
41066720 |
tagcagaacttgaaccaactactgtttttcgcgatctgtg |
41066759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 24942496 - 24942555
Alignment:
| Q |
132 |
atatgaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatag |
191 |
Q |
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| T |
24942496 |
atatgaacagatcgctattgttccatgatacgctaattagtacaaaatgttgtcaaatag |
24942555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 38622955 - 38622874
Alignment:
| Q |
116 |
gctatagcgttgcagtatatgaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatagtggcta |
197 |
Q |
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| T |
38622955 |
gctatagcgtagcagaatttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggcta |
38622874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 29505241 - 29505281
Alignment:
| Q |
198 |
gcgtagcagaacttgaaccaactactatttttcgcgatctg |
238 |
Q |
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| T |
29505241 |
gcgtatcagaatttgagccaactactatttttcgcgatctg |
29505281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 4787917 - 4787978
Alignment:
| Q |
136 |
gaacatattgttattgttccatgatacactaattagtacatattgctgtcaaatagtggcta |
197 |
Q |
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| T |
4787917 |
gaacatatcgttattgtctaatgatacactatttagtacaaaatgttgtcaaatagtggcta |
4787978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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