View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_73 (Length: 250)
Name: NF3162_low_73
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26062834 - 26062590
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacatacaatgcaaatattttgaattttcatagttaactaaaacaccata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26062834 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattc--aattttcatagttaactaaaacaccata |
26062737 |
T |
|
| Q |
101 |
taactttaggttattaaagttaatacataggaaggacaaaaatatgcaaaagttcaaaaaacacatagcaggtggcnnnnnnnnnca---ataactcact |
197 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
26062736 |
taactttaggttattaaagttaattcataggaaggacaagaatatgcaaaagttcaaaaaacacatagcaggtggcaaagaaaaaaaatgataactcact |
26062637 |
T |
|
| Q |
198 |
taagcaatcacaaagtcaaagtttcccttaaattgcagtctctgctc |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
26062636 |
taagcgatcacaaagtcaaagtttcccttaaattgctgtctccgctc |
26062590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26082803 - 26082559
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacatacaatgcaaatattttgaattttcatagttaactaaaacaccata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26082803 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattc--aattttcatagttaactaaaacaccata |
26082706 |
T |
|
| Q |
101 |
taactttaggttattaaagttaatacataggaaggacaaaaatatgcaaaagttcaaaaaacacatagcaggtggcnnnnnnnnnca---ataactcact |
197 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
26082705 |
taactttaggttattaaagttgattcataggaaggacaagaatatgcaaaagttcaaaaaacacatagcaggtggcaaagaaaaaaaatgataactcact |
26082606 |
T |
|
| Q |
198 |
taagcaatcacaaagtcaaagtttcccttaaattgcagtctctgctc |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
26082605 |
taagcgatcacaaagtcaaagtttcccttagattgctgtctctgctc |
26082559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25489165 - 25488921
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacatacaatgcaaatattttgaattttcatagttaactaaaacaccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
25489165 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaca-ctacatacaatgcaaatattc--aattttcatagttaactaaaacaccata |
25489069 |
T |
|
| Q |
101 |
taactttaggttattaaagttaatacataggaaggacaaaaatatgcaaaagttcaaaaaacacatagcaggtggcnnnnnnnnnca----ataactcac |
196 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
25489068 |
taactttaggttattaaagttaattcataggaaggacaagaatatgcaaaagttcaaaaaacacatagcaggtggcaaagaaaaaaaaattataactcac |
25488969 |
T |
|
| Q |
197 |
ttaagcaatcacaaagtcaaagtttcccttaaattgcagtctctgctc |
244 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
25488968 |
ttaagcgatcacaaagtcaaagtttcccttaaattgctgtctccgctc |
25488921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 25453259 - 25453084
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactaca--tacaatgcaaatattttgaattttcatagttaactaaaacacca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25453259 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacacatacaatgcaaatatt--gaattttcatagttaactaaaacacca |
25453162 |
T |
|
| Q |
99 |
tataactttaggttattaaagttaatacataggaaggacaaaaatatgcaaaagttcaaaaaacacatagcaggtggc |
176 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
25453161 |
cataactttaggttattaaagttaattcataagaaggacaaaaatatataaaagttcaaaaaacacaaagcaggtggc |
25453084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 25548773 - 25548673
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacatacaatgcaaatattttgaattttcatagttaactaaaacaccata |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
25548773 |
ttttgtcaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaata--ttgaatattcatagttaactaaaacaccata |
25548676 |
T |
|
| Q |
101 |
taa |
103 |
Q |
| |
|
||| |
|
|
| T |
25548675 |
taa |
25548673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26146945 - 26146845
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacatacaatgcaaatattttgaattttcatagttaactaaaacaccata |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
26146945 |
ttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaata--ttgaattttcataggtaactaaaacaccata |
26146848 |
T |
|
| Q |
101 |
taa |
103 |
Q |
| |
|
||| |
|
|
| T |
26146847 |
taa |
26146845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 24771450 - 24771347
Alignment:
| Q |
1 |
ttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacatacaatgcaaatattttgaattttcatagttaactaaaacaccata |
100 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||| | |||||||| ||| ||||||||||| |||||||| | ||||||||| |||||||||| |
|
|
| T |
24771450 |
ttttgtcaattcacttgatgctgataaaaaccagaatagtgtgtaaaaactgcatgcaatgcaaata--ttgaatttacttagttaacttaaacaccata |
24771353 |
T |
|
| Q |
101 |
taactt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
24771352 |
taactt |
24771347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 24770915 - 24770874
Alignment:
| Q |
188 |
ataactcacttaagcaatcacaaagtcaaagtttcccttaaa |
229 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
24770915 |
ataactcacttgaccaatcacaaagtcaaagtttcccttaaa |
24770874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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