View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_low_80 (Length: 239)

Name: NF3162_low_80
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_low_80
NF3162_low_80
[»] chr5 (5 HSPs)
chr5 (1-221)||(37497494-37497713)
chr5 (81-192)||(37498505-37498614)
chr5 (128-222)||(38997607-38997702)
chr5 (132-223)||(28804021-28804111)
chr5 (118-223)||(13163530-13163634)
[»] chr1 (3 HSPs)
chr1 (1-223)||(31321311-31321530)
chr1 (85-223)||(31322197-31322335)
chr1 (118-223)||(34650784-34650889)
[»] chr8 (3 HSPs)
chr8 (110-223)||(2687435-2687548)
chr8 (144-189)||(27166991-27167036)
chr8 (144-213)||(17097320-17097389)
[»] chr4 (1 HSPs)
chr4 (127-222)||(8332215-8332310)
[»] chr7 (3 HSPs)
chr7 (127-207)||(3697863-3697943)
chr7 (139-223)||(35711277-35711361)
chr7 (110-151)||(28686815-28686856)
[»] chr6 (1 HSPs)
chr6 (148-222)||(28636177-28636250)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37497713 - 37497494
Alignment:
Q  1 ctcgaaactgatatcaaatcgagacaagtggaagacataggcggatgctatatctatggtttgttatttcataccacttcgtgcaaaagaagcatgcttt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  37497713 ctcgaaactaatatcaaatcgagacaagtggaagacataggcggatgctatatctatggtttgttatttcataccacttcgtgcaaaagaaccatacttt 37497614  T
Q  101 tgtaaaaagatcatggaaattttacggttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaact 200  Q
    |   ||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  37497613 ttacaaaagatcatggaaattttacggctttatgatctatcggtgaa-atttagcataaatggatgatatggatagaagaaatggtgaaagtgtgcaact 37497515  T
Q  201 aagatgaaaatggaggaagaa 221  Q
    |||||||||||||||||||||    
T  37497514 aagatgaaaatggaggaagaa 37497494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 37498505 - 37498614
Alignment:
Q  81 gtgcaaaagaagcatgcttttgtaaaaagatcatggaaattttacggttttatgatctatctgtgaatttttagcataaatggatgatatggatggaaga 180  Q
    |||||||||||||||| |||||| ||||  |||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || || | | |||||    
T  37498505 gtgcaaaagaagcatgtttttgtgaaaa--tcatgggaattttacagttttatgatctatttgtgaatttttagcataaatggaggacatagctagaaga 37498602  T
Q  181 aatggtgaaagt 192  Q
    ||||||||||||    
T  37498603 aatggtgaaagt 37498614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 38997702 - 38997607
Alignment:
Q  128 ttttatgatctatctgtgaattttt-agcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggaggaagaaa 222  Q
    ||||||||||||| ||||| ||||| |||| |||| || ||||| | | |||||||||||||| |||| | |||||||||||||||||||||||||    
T  38997702 ttttatgatctatatgtgatttttttagcagaaatcgaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaa 38997607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 28804111 - 28804021
Alignment:
Q  132 atgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggaggaagaaag 223  Q
    ||||||| | |||||||||||  || ||||||  ||||||| | |||||||||||||| |||| | |||||||||||||| || ||||||||    
T  28804111 atgatctctttgtgaatttttgacagaaatggg-gatatgggtagaagaaatggtgaaggtgtgcgactaagatgaaaattgacgaagaaag 28804021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 13163530 - 13163634
Alignment:
Q  118 aattttacggttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggagga 217  Q
    |||||||  |||||||||||||| ||||||||||||||| | ||||| ||||| | | ||| |||| ||||| |||| |   |||| |||||||| ||||    
T  13163530 aattttaaagttttatgatctatatgtgaatttttagcaaatatggaggatataggtagaa-aaattgtgaaggtgtgcggttaagttgaaaatgaagga 13163628  T
Q  218 agaaag 223  Q
    ||||||    
T  13163629 agaaag 13163634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31321530 - 31321311
Alignment:
Q  1 ctcgaaactgatatcaaatcgagacaagtggaagacataggcggatgctatatctatggtttgttatttcataccacttcgtgcaaaagaagcatgcttt 100  Q
    ||||||| ||||||||||||||||||| |||  |||| ||| | ||| ||| |||||||||| |||||| |||| |||| ||||||||||| ||||||||    
T  31321530 ctcgaaattgatatcaaatcgagacaaatggtggacacaggtgaatgttatctctatggttt-ttattttatactacttagtgcaaaagaaccatgcttt 31321432  T
Q  101 tgtaaaaagatcatggaaattttacggttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaact 200  Q
    ||| ||||  ||| | ||||||||  ||||||||||||||||||||| ||||| || ||||||| ||||||| | || ||||||||||| |||| |  ||    
T  31321431 tgtgaaaa--tcacgaaaattttatagttttatgatctatctgtgaaattttaacagaaatggaggatatgggtagacgaaatggtgaaggtgtgcggct 31321334  T
Q  201 aagatgaaaatggaggaagaaag 223  Q
    ||||||||||| |||||||||||    
T  31321333 aagatgaaaatagaggaagaaag 31321311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 31322197 - 31322335
Alignment:
Q  85 aaaagaagcatgcttttgtaaaaagatcatggaaattttacggttttatgatctatct--gtgaatttttagcataaatggatgatatggatggaagaaa 182  Q
    ||||||| |||||||||||  |||  |||||  |||||||| |||||||||||||| |  |||||||| ||||| ||||||| ||||||| | |||||||    
T  31322197 aaaagaaccatgcttttgtggaaa--tcatgagaattttacagttttatgatctatatatgtgaatttatagcagaaatggaggatatgggtagaagaaa 31322294  T
Q  183 tggtgaaagtgtacaactaagatgaaaatggaggaagaaag 223  Q
    ||||||| |||| | |||||||| |||||  ||||||||||    
T  31322295 tggtgaaggtgtgcgactaagataaaaataaaggaagaaag 31322335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 34650889 - 34650784
Alignment:
Q  118 aattttacggttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggagga 217  Q
    ||||||||||| |||||||| |||| ||||||||||||| ||||  | | ||||| | ||||||||||||||  ||| ||||||| || ||||| ||| |    
T  34650889 aattttacggtattatgatcaatctatgaatttttagcagaaataaagggtatgggtagaagaaatggtgaagatgtgcaactaaaataaaaatagagaa 34650790  T
Q  218 agaaag 223  Q
    ||||||    
T  34650789 agaaag 34650784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 2687548 - 2687435
Alignment:
Q  110 atcatggaaattttacggttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaa 209  Q
    ||||||| |||||||| |||||||||||||| | ||||||||||||| ||||||| ||||||| |     |||||||||| |||| |  |||||||||||    
T  2687548 atcatgggaattttacagttttatgatctatgtatgaatttttagcagaaatggaggatatgggtattgaaaatggtgaaggtgtgcggctaagatgaaa 2687449  T
Q  210 atggaggaagaaag 223  Q
    ||||| ||||||||    
T  2687448 atggaagaagaaag 2687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 27166991 - 27167036
Alignment:
Q  144 tgaatttttagcataaatggatgatatggatggaagaaatggtgaa 189  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||    
T  27166991 tgaatttttagcataaatggaagatatgggtagaagaaatggtgaa 27167036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 17097389 - 17097320
Alignment:
Q  144 tgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatgg 213  Q
    |||||||||||||| |||||| ||||||| | ||||||||| ||||  | | || |||||||||||||||    
T  17097389 tgaatttttagcatgaatggaggatatgggtagaagaaatgttgaatatatgcagctaagatgaaaatgg 17097320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 8332215 - 8332310
Alignment:
Q  127 gttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggaggaagaaa 222  Q
    |||||||||  ||| ||||||||||||||| ||||||  ||||||||| ||||||||| |||||||||    ||||||||||||| ||||||||||    
T  8332215 gttttatgacatatttgtgaatttttagcagaaatggtcgatatggatagaagaaatgatgaaagtgtgtggctaagatgaaaatagaggaagaaa 8332310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 3697943 - 3697863
Alignment:
Q  127 gttttatgatctatctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatga 207  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| | ||| |||| ||||| |||| || |||| ||||    
T  3697943 gttttatgatctatctgtgaatttttagcagaaatggacgatatgggtagaataaatagtgaaggtgtgcagctaatatga 3697863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 35711277 - 35711361
Alignment:
Q  139 atctgtgaatttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggaggaagaaag 223  Q
    |||| ||||||||||||| ||||||| || |||||| ||||||| |||||| || | ||  |||| |||||| ||||||||||||    
T  35711277 atctttgaatttttagcagaaatggaggaaatggatagaagaaacggtgaaggtatgcaggtaagttgaaaagggaggaagaaag 35711361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 28686856 - 28686815
Alignment:
Q  110 atcatggaaattttacggttttatgatctatctgtgaatttt 151  Q
    |||||||||||||||| ||||||||||| ||||| |||||||    
T  28686856 atcatggaaattttacagttttatgatccatctgcgaatttt 28686815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 28636177 - 28636250
Alignment:
Q  148 tttttagcataaatggatgatatggatggaagaaatggtgaaagtgtacaactaagatgaaaatggaggaagaaa 222  Q
    ||||||||| ||||||| ||| ||| |  ||||||||||||| ||||   |||||||||||||||||||||||||    
T  28636177 tttttagcaaaaatggaggat-tgggtaaaagaaatggtgaaggtgtgagactaagatgaaaatggaggaagaaa 28636250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University