View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_low_84 (Length: 237)

Name: NF3162_low_84
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_low_84
NF3162_low_84
[»] chr3 (4 HSPs)
chr3 (1-237)||(25044231-25044467)
chr3 (90-237)||(25040582-25040729)
chr3 (81-235)||(54479419-54479573)
chr3 (112-221)||(25042758-25042863)
[»] chr4 (2 HSPs)
chr4 (9-237)||(28649716-28649944)
chr4 (68-237)||(10124174-10124343)
[»] chr2 (3 HSPs)
chr2 (68-237)||(21393113-21393282)
chr2 (75-237)||(21422423-21422589)
chr2 (174-235)||(1975159-1975220)
[»] chr1 (1 HSPs)
chr1 (112-237)||(24690533-24690658)
[»] chr7 (3 HSPs)
chr7 (161-237)||(40279823-40279899)
chr7 (161-237)||(40458451-40458527)
chr7 (127-234)||(39600433-39600540)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 25044231 - 25044467
Alignment:
Q  1 aagaccctattcatagttctttataggcttagtaccatcgatttgttgagtaaatgataaacatcaaaagggtacagaaggatcaagttgtttgcatagt 100  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  25044231 aagactctattcatagttctttataggcttagtaccatcaatttgttgagtaaacgataaacattaaaagggtacagaaggatcaagttgtttgcatagt 25044330  T
Q  101 tcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25044331 tcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccca 25044430  T
Q  201 gcatttgtcccaacaacagaaacaaccaattgatatt 237  Q
    ||||||||||||||| |||||||||||||||||||||    
T  25044431 gcatttgtcccaacagcagaaacaaccaattgatatt 25044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 25040582 - 25040729
Alignment:
Q  90 gtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagatt 189  Q
    ||||||||||||||| |||||| ||||||||||| ||||| |||||||| | || ||||||   ||| ||||||||||||||||||||||||| ||| ||    
T  25040582 gtttgcatagttcaaaataagtcaaataaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagctt 25040681  T
Q  190 gcaacaacccagcatttgtcccaacaacagaaacaaccaattgatatt 237  Q
    ||||||||| |  |||||||||| ||||||||||||||||||||||||    
T  25040682 gcaacaaccaattatttgtcccagcaacagaaacaaccaattgatatt 25040729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 54479573 - 54479419
Alignment:
Q  81 gatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattg 180  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||| |  |||||  ||| | |  ||||| ||||||||||  ||    
T  54479573 gatcaagttgtttgcagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctg 54479474  T
Q  181 tttaagattgcaacaacccagcatttgtcccaacaacagaaacaaccaattgata 235  Q
    |||| |  |||| || || ||||||||||| || |||||||||| ||| ||||||    
T  54479473 tttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgata 54479419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 25042758 - 25042863
Alignment:
Q  112 taaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtccc 211  Q
    |||||| |||||||||||||||||||  || | ||||||||||    ||||| ||| ||| |||| | ||| ||| ||||| || || ||||||||||||    
T  25042758 taaatatagaaccctatttttggcactggtacgatgatggttg----acttgaaaatatatttcagtggttcaagcttgcagcagccaagcatttgtccc 25042853  T
Q  212 aacaacagaa 221  Q
    ||||||||||    
T  25042854 aacaacagaa 25042863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 28649716 - 28649944
Alignment:
Q  9 attcatagttctttataggcttagtaccatcgatttgttgagtaaatgataaacatcaaaagggtacagaaggatcaagttgtttgcatagttcaagata 108  Q
    |||||||||||||||||||  ||||||   | |||||||||| ||| ||||||||||||||||||| | || ||||||||| ||||||||||||||||||    
T  28649716 attcatagttctttataggtatagtactgccaatttgttgagcaaacgataaacatcaaaagggtatataatgatcaagttatttgcatagttcaagata 28649815  T
Q  109 agttaaataaagaaccctattttt-ggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttg 207  Q
    ||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28649816 agttaaataaagaactctattttttggcat-tgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttg 28649914  T
Q  208 tcccaacaacagaaacaaccaattgatatt 237  Q
    ||||||||||| |||||||||||| |||||    
T  28649915 tcccaacaacaaaaacaaccaattaatatt 28649944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 68 - 237
Target Start/End: Original strand, 10124174 - 10124343
Alignment:
Q  68 aagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaa 167  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||| | |||||||||||||    
T  10124174 aagggtagggaaggatcaagttgtttgcaaagttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaa 10124273  T
Q  168 aatacttcaattgtttaagattgcaacaacccagcatttgtcccaacaacagaaacaaccaattgatatt 237  Q
    |||| |||||||||| ||| || |||||||| ||||||||||| | ||||||||||||||||||||||||    
T  10124274 aatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatatt 10124343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 237
Target Start/End: Complemental strand, 21393282 - 21393113
Alignment:
Q  68 aagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaa 167  Q
    |||||| |||||||||||||||||| ||||| ||||| |||||| ||||||||||| ||||| |||||||| |||| |||||| ||||| ||||||||||    
T  21393282 aagggtccagaaggatcaagttgttggcataattcaaaataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaa 21393183  T
Q  168 aatacttcaattgtttaagattgcaacaacccagcatttgtcccaacaacagaaacaaccaattgatatt 237  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  21393182 aatacttcaattgttcaagcttgcaacaaccgagcatttgtcccagcaatagaaacaaccaattgatatt 21393113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 21422589 - 21422423
Alignment:
Q  75 cagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatactt 174  Q
    |||||||||||||||| | ||||| ||||| |||||| |||||||||||  |||| ||||||||||| | |||||| |||||||||||||||||||||||    
T  21422589 cagaaggatcaagttggtggcataattcaaaataagtcaaataaagaactgtattcttggcacctgtgcgatgatgattgttatacttgcaaaaatactt 21422490  T
Q  175 caattgtttaagattgcaacaacccagcatttgtc----ccaacaacagaaacaaccaattgatatt 237  Q
    ||| |||| ||| ||||||||||| ||||||||||    ||| ||||||||||||||||| ||||||    
T  21422489 caaatgttcaagcttgcaacaaccaagcatttgtcccggccagcaacagaaacaaccaatagatatt 21422423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 1975159 - 1975220
Alignment:
Q  174 tcaattgtttaagattgcaacaacccagcatttgtcccaacaacagaaacaaccaattgata 235  Q
    ||||||| |||||  |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  1975159 tcaattgcttaagggtgcaacaaccaagcatttgtcccatcaacataaacaaccaattgata 1975220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 24690533 - 24690658
Alignment:
Q  112 taaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtccc 211  Q
    |||||||| || |||||||||||||| ||||| |||||| ||||||||||||||||||||| | |||| || | | ||||||||||| | |||||||| |    
T  24690533 taaataaaaaaacctatttttggcacttgttcgatgatgattgttatacttgcaaaaataccttaattattcatgcttgcaacaaccaatcatttgtctc 24690632  T
Q  212 aacaacagaaacaaccaattgatatt 237  Q
    |  ||||||||||| |||||||||||    
T  24690633 agaaacagaaacaatcaattgatatt 24690658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 40279823 - 40279899
Alignment:
Q  161 ttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacaacagaaacaaccaattgatatt 237  Q
    ||||| |||||||||||||| | |||||||||||| || | |||||| ||||||| ||  ||||||||||| |||||    
T  40279823 ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt 40279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 40458527 - 40458451
Alignment:
Q  161 ttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacaacagaaacaaccaattgatatt 237  Q
    ||||| |||||||||||||| | |||||||||||| || | |||||| ||||||| ||  ||||||||||| |||||    
T  40458527 ttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaacagcaagaacaaccaatttatatt 40458451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 39600433 - 39600540
Alignment:
Q  127 atttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacaacagaaacaac 226  Q
    |||||||||||| || ||||||   ||| |||  ||||| ||||| ||||| |||| ||| |||||||| || | ||| || |||||||||| |||||||    
T  39600433 atttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaac 39600532  T
Q  227 caattgat 234  Q
    ||||||||    
T  39600533 caattgat 39600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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