View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_87 (Length: 237)
Name: NF3162_low_87
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39077458 - 39077241
Alignment:
| Q |
1 |
atgccaaaaattccattttgcattgcagcatacttaataactatgaaaactagagtgtttggtggtgacatttataacaacagcatcttgtctgagacac |
100 |
Q |
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| T |
39077458 |
atgccaaaaattccattttgcattgcagcatacttaataactatgaaaactacattgtttggtggtgacatttataacaacagcatcttgtctgagacac |
39077359 |
T |
|
| Q |
101 |
aaacttcaatcattgtcactttatattcgttgttaattgattttcaataacattaattaatatttgttgtattattatcaactctccttgccctacattg |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39077358 |
aaatttcaatcattgtcactttatattcgttgttaattgattttcaataac----attagtatttgttgtattattatcaactctccttgccctacattg |
39077263 |
T |
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| Q |
201 |
cattgcatgtcagtgaaaaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39077262 |
cattgcatgtcagtgaaaaaat |
39077241 |
T |
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