View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_low_9 (Length: 500)
Name: NF3162_low_9
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 8641898 - 8641416
Alignment:
| Q |
19 |
tgccatcaccgccatccatttccattttcacacctgtcatgtttgatgaatcaagacttgcatattccggcaaggggatgtgaaagtatgcaagaccagg |
118 |
Q |
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| T |
8641898 |
tgccatcaccgctatatgtttccattttcacacctgtcatgtttgatgaatcaagacttgcatattccggtaaggggatgtgaaagtatgcaagaccagg |
8641799 |
T |
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| Q |
119 |
agcagcttctttttgtggcgccggtccttt-atatatgcattctgcagaataaataaagagtgaagtcagatactaaacaataaagagaaactagataat |
217 |
Q |
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| T |
8641798 |
agcagcttctttttgtggcgccggtccttttatatatgcattctgcagaataaataaagagtgaagtcagatactaaacaataaagagaaactagataat |
8641699 |
T |
|
| Q |
218 |
ttggtataagctaatgtgatagtacccgaagattagcagacgttcgctcaaaccaaagttgctgtgagggcttgatccaatcataaccatgaatcgtcgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8641698 |
ttggtataagctaatgtgatagtacccgaagattagcagacgttcgctcaaaccaaagttgctgtgagggcttgatccaatcataaccaggaatcgtcgg |
8641599 |
T |
|
| Q |
318 |
aactttggaataatctccactgtcaagaaagtatagattgagaactgatttattttcaaaagcagtacctagaacaccaccaacctccaagttattgttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||| |
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| T |
8641598 |
aactttggaataatctccactgtcaagaaagtatagattgagaactgatttattttcaaagacagtaccttgaacaccaccgatctccaagttattgttc |
8641499 |
T |
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| Q |
418 |
ccaaaaccatcaatgatgtgtacttctggaggattaactttagataaagagtttttcaatccaacaatatatttcatcacacc |
500 |
Q |
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| T |
8641498 |
ccaaaaccatcaatgatgtgtacttctggaggattgactttagataaagagtttttcaatccaacaatatatttcatcacacc |
8641416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 8648478 - 8647996
Alignment:
| Q |
19 |
tgccatcaccgccatccatttccattttcacacctgtcatgtttgatgaatcaagacttgcatattccggcaaggggatgtgaaagtatgcaagaccagg |
118 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8648478 |
tgccatcaccgctatatgtttccattttcacacctgtcatgtttgatgaatcaagacttgcatattccggtaaggggatgtgaaagtatgcaagaccagg |
8648379 |
T |
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| Q |
119 |
agcagcttctttttgtggcgccggtccttt-atatatgcattctgcagaataaataaagagtgaagtcagatactaaacaataaagagaaactagataat |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648378 |
agcagcttctttttgtggcgccggtccttttatatatgcattctgcagaataaataaagagtgaagtcagatactaaacaataaagagaaactagataat |
8648279 |
T |
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| Q |
218 |
ttggtataagctaatgtgatagtacccgaagattagcagacgttcgctcaaaccaaagttgctgtgagggcttgatccaatcataaccatgaatcgtcgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8648278 |
ttggtataagctaatgtgatagtacccgaagattagcagacgttcgctcaaaccaaagttgctgtgagggcttgatccaatcataaccaggaatcgtcgg |
8648179 |
T |
|
| Q |
318 |
aactttggaataatctccactgtcaagaaagtatagattgagaactgatttattttcaaaagcagtacctagaacaccaccaacctccaagttattgttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||| |
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| T |
8648178 |
aactttggaataatctccactgtcaagaaagtatagattgagaactgatttattttcaaagacagtaccttgaacaccaccgatctccaagttattgttc |
8648079 |
T |
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| Q |
418 |
ccaaaaccatcaatgatgtgtacttctggaggattaactttagataaagagtttttcaatccaacaatatatttcatcacacc |
500 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648078 |
ccaaaaccatcaatgatgtgtacttctggaggattgactttagataaagagtttttcaatccaacaatatatttcatcacacc |
8647996 |
T |
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