View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3163_high_4 (Length: 438)
Name: NF3163_high_4
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3163_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 86 - 432
Target Start/End: Original strand, 10008200 - 10008547
Alignment:
| Q |
86 |
gaatatgtatttaatgaagattatttcttagaatgtacgggg-tgaggggttttgagaagaggttggaggtttgataattggtgggtgatacgtggtcat |
184 |
Q |
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| T |
10008200 |
gaatatgtatttaatgaagattatttcttagaatgtacgggggtgaggggttttgagaagaggttggaggtttgacatttggtgggtgatacgtggtcat |
10008299 |
T |
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| Q |
185 |
ctattttttaaattgaaaaaccaagttatgttatattgatgatctgttatgtcctcctatttaaggcagcttgcctcatgtctattctttttgttcttta |
284 |
Q |
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| T |
10008300 |
ctattatctaaattgaaaatccaagttatgttatattgatgatctgttatgtcctcctatatagggcagcttgcctcatgtctattctttttattcttta |
10008399 |
T |
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| Q |
285 |
gttggtgctcaggaggtatggtaattatttgggattgccttgaggttgaggtgtggttgtcttttactttcaatcatgttcttttgattgatggaagctt |
384 |
Q |
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| T |
10008400 |
gttggtgctcaggaggtatgataattatttgggattgccttgaggttgaggtctggttgtcctttactttcaatcatgttcttttgattaatggaagctt |
10008499 |
T |
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| Q |
385 |
tgtgaaaactaacgaggagtttattctagttaatgtttatgctccttt |
432 |
Q |
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| T |
10008500 |
tgtgaaaactaatgaggagtttattctagttaatgtttatgttccttt |
10008547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 10007817 - 10007889
Alignment:
| Q |
18 |
gtaaggatagaaaagagg--cttcatgtgacaaaaaacgatgacgtgctattagaaataaatatttgcaagaa |
88 |
Q |
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| T |
10007817 |
gtaaggatggaaaagaggtgcttcatgtgacgaaaaacgacgacgtgctattagaaataaatatttgcaagaa |
10007889 |
T |
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