View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3163_high_7 (Length: 250)

Name: NF3163_high_7
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3163_high_7
NF3163_high_7
[»] chr2 (3 HSPs)
chr2 (11-233)||(1170577-1170799)
chr2 (216-249)||(1170798-1170831)
chr2 (15-45)||(1164532-1164562)
[»] scaffold0153 (3 HSPs)
scaffold0153 (38-216)||(32720-32890)
scaffold0153 (158-224)||(18033-18099)
scaffold0153 (75-111)||(17963-17999)
[»] chr6 (4 HSPs)
chr6 (27-224)||(25994820-25995015)
chr6 (24-224)||(26094284-26094478)
chr6 (24-111)||(25553654-25553741)
chr6 (158-224)||(25553748-25553814)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 1170577 - 1170799
Alignment:
Q  11 cacagaccggtagtagcatatttcagcataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcct 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1170577 cacagaccggtagtagcatatttcagcataaaactgctagacggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcct 1170676  T
Q  111 ctatctctactcgaagaaccaacaacaaaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgta 210  Q
    ||||||||||||||||||| | ||||||||||||||||||       ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  1170677 ctatctctactcgaagaacgagcaacaaaatttgttaaccaaaaaaatattatgcatgaatataaacaatgttcagaatcaaatataatgtttctgcgta 1170776  T
Q  211 tagctaataaatactattgtaaa 233  Q
    |||||||||||||||||||||||    
T  1170777 tagctaataaatactattgtaaa 1170799  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 1170798 - 1170831
Alignment:
Q  216 aataaatactattgtaaagtatctgaagatcata 249  Q
    ||||||||||||||||||||||||||||||||||    
T  1170798 aataaatactattgtaaagtatctgaagatcata 1170831  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 1164532 - 1164562
Alignment:
Q  15 gaccggtagtagcatatttcagcataaaact 45  Q
    |||||||||||||||||||||||||||||||    
T  1164532 gaccggtagtagcatatttcagcataaaact 1164562  T

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Target: scaffold0153 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 32720 - 32890
Alignment:
Q  38 ataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctctatctctactcgaagaaccaacaaca 137  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |  ||||| || |||||    
T  32720 ataaaactactagacggtagacacaattttattatccacttatattcaatgacaccctaaacaatttggtcctctatctctaatgaaagaatcatcaaca 32819  T
Q  138 aaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagcta 216  Q
    |||||||||||||        | |||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||    
T  32820 aaatttgttaacc--------aatatgcatgaatataagcaatgttcagaatcaaatataatgtttttgcgtatagcta 32890  T

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Target: scaffold0153; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 18033 - 18099
Alignment:
Q  158 tattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaatac 224  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||| || |||||||| |||||||    
T  18033 tattatgcatgaatataagcaatgttcagaatcaaatataatgtttcagcttatagctagtaaatac 18099  T

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Target: scaffold0153; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 17963 - 17999
Alignment:
Q  75 acttatattcaatgataacctaaacaatttggtcctc 111  Q
    ||||||||| || ||||||||||||||||||||||||    
T  17963 acttatatttaaagataacctaaacaatttggtcctc 17999  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 25994820 - 25995015
Alignment:
Q  27 catatttcagcataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctctatctctactcgaag 126  Q
    ||||||| ||||||||||| ||||  |||  |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  25994820 catattttagcataaaactactagccggtgtacacaattttattatccacttatatttaaagataacctaaataatttggtcctctatctctacttgaag 25994919  T
Q  127 aaccaacaacaaaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaatac 224  Q
    || || |||| |||||||||||||       |||||||||||||||| |  | |||||||||| |||| ||||||||| |  |||||||| |||||||    
T  25994920 aatcagcaac-aaatttgttaacc-aaaaaatattatgcatgaatattagcactgttcagaatcaaatctaatgtttcagtttatagctagtaaatac 25995015  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 26094284 - 26094478
Alignment:
Q  24 tagcatatttcagcataaaactgct-agatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctctatctctactc 122  Q
    |||||||||| ||||||||||| || ||| |||  |||||||||||||| |     ||||| || ||||||||||| ||||||||||||||||||||||     
T  26094284 tagcatattttagcataaaactacttagacggtgtacacaattttattagc-----atatttaaagataacctaaataatttggtcctctatctctactt 26094378  T
Q  123 gaagaaccaacaacaaaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaat 222  Q
    |||||| || |||| |||||||||||||       |||||||||| |||||||  |||||||||||| |||| ||||||||| || |||| ||| |||||    
T  26094379 gaagaatcagcaac-aaatttgttaacc-aaaaaatattatgcattaatataagcaatgttcagaatcaaatctaatgtttcagcttatatctagtaaat 26094476  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 25553654 - 25553741
Alignment:
Q  24 tagcatatttcagcataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctc 111  Q
    |||||||||| ||||||||||| ||||| |||  |||||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  25553654 tagcatattttagcataaaactactagacggtgtacacaattttattatccatttatatttaaagataacctaaataatttggtcctc 25553741  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 25553748 - 25553814
Alignment:
Q  158 tattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaatac 224  Q
    ||||||||||||||||||  |||||||||||| |||| ||||||||| || |||||||| |||||||    
T  25553748 tattatgcatgaatataagcaatgttcagaatcaaatctaatgtttcagcttatagctagtaaatac 25553814  T

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