View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3163_high_9 (Length: 235)
Name: NF3163_high_9
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3163_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1170976 - 1171197
Alignment:
| Q |
1 |
tcctccttaaccgttcatcttcttcaatttctgccaacacatcctcaactgaatctgtaggtgatgatggtgaaatatcatcactatccttactctgttg |
100 |
Q |
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| T |
1170976 |
tcctccttaaccgttcatcttcttcaatttctgccaacacatcctcaactgaatctgtgggtgatgatggtgaaatatcatcactatccttactccgttg |
1171075 |
T |
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| Q |
101 |
tgtcatcgattgcaccgtgacgctcttgctgctattgctatggcaattttcatccaagtaggttgtgctattactaagttctattaggagttttgctgca |
200 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1171076 |
cgtcattgattgcaccgtgacgctgttgctgctattgctatggcaattttcatccaagtaggttgtgctattactaagttctattaggagttttgctgca |
1171175 |
T |
|
| Q |
201 |
tcaatttccgtaagggagaaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1171176 |
tcaatttccgtaagggagaaaa |
1171197 |
T |
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