View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3163_low_1 (Length: 540)
Name: NF3163_low_1
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3163_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 45 - 411
Target Start/End: Complemental strand, 10971632 - 10971266
Alignment:
| Q |
45 |
acttatatagaatttgagctaataatagctaagctgcatagcatagtttgagttagttaccaatggcaacaataacacagtcactagcaacttcatgttc |
144 |
Q |
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| T |
10971632 |
acttatagagaatttgagctaataatagctaagctgcatagcatagtttgagttagttaccaatggcaacaataacccagtcactagcaacttcatgttc |
10971533 |
T |
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| Q |
145 |
aactatccaacgcattcgtattcaacgcacattcaactttaacaataacacgcgcttctttccaaacgtaaccgtttctcttcaattttcccctttcgtt |
244 |
Q |
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| T |
10971532 |
aactatccaacgcattcgtattcaacgcacattcaactttaacaataacacgcgcttctttccaaacgtaaccgtttctcttcaatttccccctttcgtt |
10971433 |
T |
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| Q |
245 |
tttcccggcaaatctccgcgccacaccgccgccgttttctccgccgccgacgacgacagccacaccacgtcgaatgacctcgccgttcttctcgaagtcg |
344 |
Q |
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| T |
10971432 |
tttcccggcaaatctccgcgccacaccgccgccgttttctccgccgatgacgacgacagccacatcacgtcgaatgacttcgccgttcttctcgaagtcg |
10971333 |
T |
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| Q |
345 |
acgggttaatttttcatttctcttccgcattggaacaattgcgttttcactctgcttaactgtaatc |
411 |
Q |
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| T |
10971332 |
acgggttaatttttcatttctcttctgcattggaacaattgcgttttcactctgcttaactgtaatc |
10971266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 10971205 - 10971148
Alignment:
| Q |
473 |
tgcgtatcgtgtagggaatcgactagcgttcaataaaggtatcaacaattattctgtg |
530 |
Q |
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| T |
10971205 |
tgcgtatcgtgtagggaatcgactagcgttcaataaaggtatcaacaattattctgtg |
10971148 |
T |
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