View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3163_low_10 (Length: 226)
Name: NF3163_low_10
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3163_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 10103890 - 10104111
Alignment:
| Q |
2 |
atttatttattaactactccatctattctaaaataagatcatgctactgactgtaacactcgttcaagnnnnnnnnnnnnnnnnnncataaattttgttt |
101 |
Q |
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| T |
10103890 |
atttatttattaactactccatctattctaaaataagatcatgctaccgactgcgacacttgttcaagaaaaaaaaaacataaaa-cataaattttgttt |
10103988 |
T |
|
| Q |
102 |
tgaaaagannnnnnnn-acaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaacaaaaattgttcaatatat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10103989 |
tgaaaagatttttttttacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaagaaaaattgttcaatatat |
10104088 |
T |
|
| Q |
201 |
gaaggttaagttgaagttgatga |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10104089 |
gaaggttaagttgaagttgatga |
10104111 |
T |
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