View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3163_low_2 (Length: 513)

Name: NF3163_low_2
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3163_low_2
NF3163_low_2
[»] chr3 (3 HSPs)
chr3 (13-263)||(44803008-44803258)
chr3 (325-496)||(44803320-44803490)
chr3 (168-212)||(8845207-8845251)
[»] chr4 (2 HSPs)
chr4 (168-236)||(4605838-4605906)
chr4 (168-212)||(6484697-6484741)
[»] chr8 (1 HSPs)
chr8 (167-209)||(40038944-40038986)
[»] chr5 (2 HSPs)
chr5 (168-210)||(35695230-35695272)
chr5 (151-210)||(4460462-4460526)
[»] chr7 (1 HSPs)
chr7 (167-208)||(32358827-32358868)
[»] chr2 (1 HSPs)
chr2 (180-212)||(29241628-29241660)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 44803008 - 44803258
Alignment:
Q  13 aatataactaatatgatatagattcttttgctaaaaaagaaattatatagattcttatcannnnnnnncttggggtgaaaaccttgatatatacacgttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  44803008 aatataactaatatgatatagattcttttgctaaaaaagaaattatatagattcttatcattttttttcttggggtgaaaaccttgatatatacacgttt 44803107  T
Q  113 tatcgctcggcttaatgaaataagttacattcttatcttgataccaacaatatatttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44803108 tatcgctccgcttaatgaaataagttacattcttatcttgataccaacaatatatgtatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 44803207  T
Q  213 tattcaaaatcatgtaatctctttgtatgctgtatagattgtgttcgtgta 263  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44803208 tattcaaaatcatgtaatctctttgtatgcagtatagattgtgttcgtgta 44803258  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 325 - 496
Target Start/End: Original strand, 44803320 - 44803490
Alignment:
Q  325 atgtttctgaagaggaagaaccaataagaatttccctnnnnnnnctagaatttgatgcgctccctcatcttcatctttgtgttgctgccacatctcattc 424  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44803320 atgtttctgaagaggaagaaccaataagaatttccctaaaaaaactagaatttgatgcgctccctcatcttcatctttgtgttgctgccacatctcattc 44803419  T
Q  425 tttctaaatcaattaatcaacaacaaccttctatttctttcctccatccaatcatttttggttgcccaaggc 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44803420 tttctaaatcaattaatcaacaacaaccttctatttctttcctccatccaatca-ttttggttgcccaaggc 44803490  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 8845207 - 8845251
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  8845207 ttataggcaattttgttgaaaggtataattggaagtgaacaagtc 8845251  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 4605838 - 4605906
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtctattcaaaatcatgtaatctcttt 236  Q
    |||||||||| |||||||||  ||| | |||||||||||| |||| |||||||| |||||| |||||||    
T  4605838 ttatatgcaaatttgtttaagcgtacacttggaagtgaaagagtcaattcaaaaccatgtattctcttt 4605906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 6484741 - 6484697
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    |||||||||| |||||||||  |||||||||||||||||||||||    
T  6484741 ttatatgcaaatttgtttaagggtataattggaagtgaaaaagtc 6484697  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 40038944 - 40038986
Alignment:
Q  167 tttatatgcaattttgtttaaatgtataattggaagtgaaaaa 209  Q
    |||||||| || ||||||||| |||||||||||||||||||||    
T  40038944 tttatatgtaaatttgtttaagtgtataattggaagtgaaaaa 40038986  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 35695272 - 35695230
Alignment:
Q  168 ttatatgcaattttgtttaaatgtataattggaagtgaaaaag 210  Q
    |||||||||| |||||||||  |||||||||||||||||||||    
T  35695272 ttatatgcaaatttgtttaagggtataattggaagtgaaaaag 35695230  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 4460526 - 4460462
Alignment:
Q  151 tgataccaacaatata-----tttatatgcaattttgtttaaatgtataattggaagtgaaaaag 210  Q
    ||||||||||||||||     |||||| | ||||||||||||  |||||||||||||||||||||    
T  4460526 tgataccaacaatatagcatttttataggtaattttgtttaagggtataattggaagtgaaaaag 4460462  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 32358868 - 32358827
Alignment:
Q  167 tttatatgcaattttgtttaaatgtataattggaagtgaaaa 208  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  32358868 tttatatgcaaatttgtttaggtgtataattggaagtgaaaa 32358827  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 29241660 - 29241628
Alignment:
Q  180 ttgtttaaatgtataattggaagtgaaaaagtc 212  Q
    ||||||||||||||||||| |||||||||||||    
T  29241660 ttgtttaaatgtataattgaaagtgaaaaagtc 29241628  T

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