View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3163_low_5 (Length: 361)
Name: NF3163_low_5
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3163_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 35348644 - 35348491
Alignment:
| Q |
6 |
agcagcacagatgtcgcgaatcctatcattgcttgaggcgagttattttaagttagaattaaaatggaacctaactgggctacacactaactcgtgtgtt |
105 |
Q |
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| T |
35348644 |
agcaccacagatatcgcaaatcctattattgcttgaggcgagttattttgagttagaattaaaatggaacctaagtgtgctacatactaactcgtgtgtt |
35348545 |
T |
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| Q |
106 |
ttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacactcttt |
159 |
Q |
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| T |
35348544 |
ttgtgcgagattcttgtcgtgccaagtatcattgttcaaaacttaacactcttt |
35348491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 35346005 - 35345943
Alignment:
| Q |
284 |
ctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagttagt |
346 |
Q |
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| T |
35346005 |
ctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagttagt |
35345943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 35343958 - 35343846
Alignment:
| Q |
56 |
agttagaattaaaatggaacctaactgggctacacactaactcgtgtgttttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacact |
155 |
Q |
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| T |
35343958 |
agttggaattaaaatggaacatgtgtgagctacatactaactcgtgtgttttacgcgaaattatttttgtgccaagtatcattattcaaaacttaacact |
35343859 |
T |
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| Q |
156 |
ctttcgtattgat |
168 |
Q |
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| T |
35343858 |
cttttgtattgat |
35343846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 35348490 - 35348424
Alignment:
| Q |
212 |
tgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaacaataaacga |
278 |
Q |
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| T |
35348490 |
tgacatcgagcctatttacaggcactaacaaacaaatagttaagtactaaattcgaacaataaacga |
35348424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 35371372 - 35371432
Alignment:
| Q |
209 |
taatgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaac |
269 |
Q |
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| T |
35371372 |
taatgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaac |
35371432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 35355370 - 35355425
Alignment:
| Q |
207 |
tataatgacatccagcctatttac-aggcactaacaaactaatagttaagtactaa |
261 |
Q |
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| T |
35355370 |
tataatgacatcgagcctattaaataggcactaacaaactaatagttaagtactaa |
35355425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 35355612 - 35355553
Alignment:
| Q |
284 |
ctaatgtgttaacttacataagtatagtagttaatatcaaagcctattgaagatatagtta |
344 |
Q |
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| T |
35355612 |
ctaatgtgttaacttacataagt-cactagttagtattatagcatattgaagatatagtta |
35355553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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