View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3163_low_8 (Length: 242)
Name: NF3163_low_8
Description: NF3163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3163_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31427267 - 31427493
Alignment:
| Q |
1 |
ttatgctgatgacttgttttttgaagatgatgttgttaattgagagatagttacttaagacttagtactttgttgtgcatgattctgtgagtaatgagtt |
100 |
Q |
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| T |
31427267 |
ttatgctgatgacttgttttttgaagatgatgttgttaattgagagatagttacttaagacttagtactttgttgtgcatgattctgtgagtaatgagtt |
31427366 |
T |
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| Q |
101 |
cnnnnnnnnnnnnctgtttactatattctgttacgatcatactagttggttgaatcaaactcatttgtgaattgtggggatgtattgatatttgatacta |
200 |
Q |
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| T |
31427367 |
ctttttcttttttctgtttactatattctgttacgatcatactagttggttgaatcaaactcatttgtgaattgtggggatgtattgatatttgatacta |
31427466 |
T |
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| Q |
201 |
gttgttatgctagcttgtgttaatttt |
227 |
Q |
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| T |
31427467 |
gttgttatgctagcttgtgttaatttt |
31427493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7172228 - 7172459
Alignment:
| Q |
1 |
ttatgctgatgacttgttttttgaagatgatgttgttaattgagagatagttacttaagacttagtactttg----ttgtgcatgattctgtga------ |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||| |
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| T |
7172228 |
ttatgctgatgacttgttttttgaagatgatgttgttaattgagagatagttacttaagacttagtagttagaacgttgtt-atgattctgtgactgtga |
7172326 |
T |
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| Q |
91 |
gtaatgagttcnnnnnnnnnnnnctgtttactatattctgttacgatcatactagttggttgaatcaaactcatttgtgaattgtggggatgtattgata |
190 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | | |||||||| | |
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| T |
7172327 |
gtaatgagttcttttttttttttttgtttactatattctgttatgatcatactagttggttgaatcaaactcattcgtgaattgt-gagttgtattgaca |
7172425 |
T |
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| Q |
191 |
tttgatactagttgttatgctagcttgtgttaattttg |
228 |
Q |
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| T |
7172426 |
tttgatactagttgtta----agcttgtgttaattttg |
7172459 |
T |
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