View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_high_15 (Length: 388)
Name: NF3164_high_15
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_15 |
 | |
|
| [»] scaffold0432 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 9803799 - 9803419
Alignment:
| Q |
1 |
tgattcgtgcaatgtatatgatgaggacatgaactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9803799 |
tgattcgtgcaatgtatatgatgaggacatgaactttggcaagatattctcggaaattctgaggaaaaagaagcacaaaattaagtgggaattggaggtt |
9803700 |
T |
|
| Q |
101 |
gagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctggggaacaggtgatcaagggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9803699 |
gagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcgacaacaaacttctggggaacaggtgatcaagggaa |
9803600 |
T |
|
| Q |
201 |
catttttccataacgagcgtggatttaacaagcatgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaa |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9803599 |
catttttccgtaacgagcgtggatttaacaagcatgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaa |
9803500 |
T |
|
| Q |
301 |
tgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctca |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9803499 |
tgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctca |
9803419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 37738521 - 37738420
Alignment:
| Q |
275 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
374 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
37738521 |
tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt |
37738422 |
T |
|
| Q |
375 |
ca |
376 |
Q |
| |
|
|| |
|
|
| T |
37738421 |
ca |
37738420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 9813790 - 9813710
Alignment:
| Q |
66 |
aaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaagg |
146 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| |||| |||| | || || ||||||||||||||||||||||||| |
|
|
| T |
9813790 |
aaaagaagcataaaattaagtgggaatcggaggttgaaatgcgtgcagacttcggaaaggatcctgtgttatgtatgaagg |
9813710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 9828591 - 9828499
Alignment:
| Q |
54 |
aaattcagaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaagg |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| | || || ||||||| |||||||||||||||| |
|
|
| T |
9828591 |
aaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgctgacttcggaaaggatcaagtgttatgtatgaagg |
9828499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 9824248 - 9824163
Alignment:
| Q |
94 |
ggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctg |
179 |
Q |
| |
|
|||||||||||||| |||| | || || ||||||||||||| ||||||||||| ||| || | | ||| || ||| |||||||||| |
|
|
| T |
9824248 |
ggaggttgagatgcatgcagacttcggaaaggatcctgtgtaatgtatgaaggctgtatgtgttctttttcgacagcaaacttctg |
9824163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 19814388 - 19814291
Alignment:
| Q |
284 |
atattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctca |
381 |
Q |
| |
|
|||||||| |||| ||||||| | || ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19814388 |
atattcatttctaaaaatgttgttttccatgatcatatacttccttgtccttcttcttttgtgaagaatttggaatattttccattttcttcatctca |
19814291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 18476614 - 18476720
Alignment:
| Q |
275 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
374 |
Q |
| |
|
|||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
18476614 |
tctagagaaatattcatctatagaaatgtcatctttcatgatcatattcttccttatcctacttcttcaatgaagaatttggaataatttccattttctc |
18476713 |
T |
|
| Q |
375 |
catctca |
381 |
Q |
| |
|
||||||| |
|
|
| T |
18476714 |
catctca |
18476720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 3003923 - 3004024
Alignment:
| Q |
275 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
374 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
3003923 |
tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt |
3004022 |
T |
|
| Q |
375 |
ca |
376 |
Q |
| |
|
|| |
|
|
| T |
3004023 |
ca |
3004024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 23681221 - 23681322
Alignment:
| Q |
275 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
374 |
Q |
| |
|
|||||||| || || |||||||||||| | || |||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
23681221 |
tctagagaaatctttatctctagaaatataatttttcatgatcatattcttccttatcctccttcatctgacaagaatttggaatattttcctttttctt |
23681320 |
T |
|
| Q |
375 |
ca |
376 |
Q |
| |
|
|| |
|
|
| T |
23681321 |
ca |
23681322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 7121 - 7033
Alignment:
| Q |
10 |
caatgtatatgatgaggacatgaactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggagg |
98 |
Q |
| |
|
|||||||| |||||||||||| |||||||| |||| |||||| ||||||||||||||| ||||||||||||||| |||| | |||||| |
|
|
| T |
7121 |
caatgtatctgatgaggacattaactttggtaagaaattatctaaaattcagaggaaaaggaagcacaaaattaattggggagtggagg |
7033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 36732380 - 36732278
Alignment:
| Q |
275 |
tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt |
374 |
Q |
| |
|
|||||||| || || || ||||||||||| || |||||||| ||||| |||||||||||| |||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
36732380 |
tctagagaaatctttatatctagaaatgtaatttttcatgatcatattcttccttatcctccttcatcttaaaagaatttggaatattttcctttttctt |
36732281 |
T |
|
| Q |
375 |
cat |
377 |
Q |
| |
|
||| |
|
|
| T |
36732280 |
cat |
36732278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 23885073 - 23885012
Alignment:
| Q |
318 |
atatacttccttatccttcttcttctgtgaagaat---ttggaatattttccattttcttca |
376 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
23885073 |
atattcttccttatccttcttcatctgagaagaataatttggaatattttccattttcttca |
23885012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University