View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_high_18 (Length: 360)
Name: NF3164_high_18
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 11173211 - 11172871
Alignment:
| Q |
14 |
gagatagacttcgagaacaataccttcagtgaaagcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaaac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11173211 |
gagatagacttcgagaacaataccttcagtgaa-gcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaaac |
11173113 |
T |
|
| Q |
114 |
tttgtttctcatcattggtgaatatggactcataagttaataagttattcggttgagtcggatttttcagttaaatttgtttattggagggtataatgtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
11173112 |
tttgtttctcatcattggtgaatatggattcatatgctaataagttattcggttgagtcggatttttcagttaaatttgtttattggggggtataa---t |
11173016 |
T |
|
| Q |
214 |
gttttccatattata-----------------tatttcacctgggattattatatattatggtcattgttgctataaatcaatttatcatttgctaattt |
296 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
11173015 |
gttttccatattatatatatatgtacttgaattatttcacctgggattattatatattatggtcattgttgctaaatatcaatttatcatttggtaattt |
11172916 |
T |
|
| Q |
297 |
tgtgtgtgatattgtttagagttaatcgttctttaaattatgttg |
341 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11172915 |
tgtgtgtgatattgtttagagttgatcgttctttaaattatgttg |
11172871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University