View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_high_19 (Length: 360)
Name: NF3164_high_19
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_19 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 35053276 - 35052966
Alignment:
| Q |
15 |
agatgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagatgaaattgatgaagggaaaattttaaggtttgcttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35053276 |
agatgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagatgaaattgatgaagggaaaattttaaggtttgcttc |
35053177 |
T |
|
| Q |
115 |
aattccacttttattctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35053176 |
aattccacttttattctattgcaattactacatacaaaagtttgattatggatatcttgttctatttactaccttcttagtactccatcggtttctctct |
35053077 |
T |
|
| Q |
215 |
tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
35053076 |
tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgtcgttggttatagatgtggccaaaccttattcaaaa |
35052977 |
T |
|
| Q |
315 |
atttatagatg |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
35052976 |
atttatagatg |
35052966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 35052974 - 35052922
Alignment:
| Q |
286 |
ttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35052974 |
ttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt |
35052922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 53322163 - 53322496
Alignment:
| Q |
15 |
agatgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
53322163 |
agatgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagaatggaattgatgaagggaaaattttaaggtttgctt |
53322262 |
T |
|
| Q |
114 |
caattccacttttattctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctc |
213 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||| ||||| ||| ||| |||| ||||||| ||||||||| ||||||||||||||| |||||| |
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|
| T |
53322263 |
aaaatccacgtttattctattgcaattactacatacaaaaatttgagtattgatttcttgttctattcactaccttcctagtactccatcggtctctctc |
53322362 |
T |
|
| Q |
214 |
t---------tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaacc |
304 |
Q |
| |
|
| | ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53322363 |
tctctctctctctgattttctatgtgttttctgagtttttgcattgtatttgattttaaacggtgttgaatttgttgttggttatagatgtggccaaacc |
53322462 |
T |
|
| Q |
305 |
ttattcaaaaatttatagatggaggactttatgt |
338 |
Q |
| |
|
| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
53322463 |
tcattcaaaaatatatagatggaggattttatgt |
53322496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 16302437 - 16302477
Alignment:
| Q |
15 |
agatgaaatcaagaaaaagggttataatttttctcaatcca |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16302437 |
agatgaaatcaagaaaaagggttataatttttctcaatcca |
16302477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 12798965 - 12798672
Alignment:
| Q |
17 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
12798965 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattgatgaaggaaaaattttaaggtttgcttaa |
12798866 |
T |
|
| Q |
116 |
attccacttttattctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct- |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
12798865 |
attccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtactccatcggtttctctctc |
12798775 |
T |
|
| Q |
215 |
tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12798774 |
tttgattttctatgtattttctgagtttttgcattgtatttgattctaaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaa |
12798675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 12736138 - 12735845
Alignment:
| Q |
17 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
12736138 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattgatgaaggaaaaattttaaggtttgcttaa |
12736039 |
T |
|
| Q |
116 |
attccacttttattctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct- |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
12736038 |
attccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtgctccatcggtttctctctc |
12735948 |
T |
|
| Q |
215 |
tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12735947 |
tttgattttctatgtattttctgagtttttgcattgtatttgattctaaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaa |
12735848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 14124897 - 14124606
Alignment:
| Q |
15 |
agatgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaag-atgaaattgatgaagggaaaattttaaggtttgctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
14124897 |
agatgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattg----aggaaaaattttaaggtttgctt |
14124802 |
T |
|
| Q |
114 |
caattccacttttattctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctc |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| | ||||||| |||||||||||| ||||||||| |
|
|
| T |
14124801 |
aaattccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtactccatcagtttctctc |
14124711 |
T |
|
| Q |
214 |
t-tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaa |
312 |
Q |
| |
|
| ||||||||| ||| |||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14124710 |
tctttgattttttatatattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaa |
14124611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 20005470 - 20005759
Alignment:
| Q |
17 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaag-atgaaattgatgaagggaaaattttaaggtttgcttca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
20005470 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattg----aggaaaaattttaaggtttgcttaa |
20005565 |
T |
|
| Q |
116 |
attccacttttattctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct- |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| | ||||||| |||||||||||| |||||||||| |
|
|
| T |
20005566 |
attccacttttattctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtactccatcagtttctctctc |
20005656 |
T |
|
| Q |
215 |
tttgattttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaa |
314 |
Q |
| |
|
||||||||| ||| |||||| ||||||| |||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20005657 |
tttgattttttatatattttttgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaa |
20005756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 49622606 - 49622578
Alignment:
| Q |
15 |
agatgaaatcaagaaaaagggttataatt |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49622606 |
agatgaaatcaagaaaaagggttataatt |
49622578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 338
Target Start/End: Original strand, 40077083 - 40077185
Alignment:
| Q |
236 |
tgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatggaggacttta |
335 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||| | |
|
|
| T |
40077083 |
tgagtttttgcattgtatttgattttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttga |
40077182 |
T |
|
| Q |
336 |
tgt |
338 |
Q |
| |
|
||| |
|
|
| T |
40077183 |
tgt |
40077185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 40059071 - 40059157
Alignment:
| Q |
252 |
tgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt |
338 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||| |||| |
|
|
| T |
40059071 |
tgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgt |
40059157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 40085009 - 40085095
Alignment:
| Q |
252 |
tgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt |
338 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||| |||| |
|
|
| T |
40085009 |
tgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgt |
40085095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 35056008 - 35056061
Alignment:
| Q |
17 |
atgaaatcaagaaaaagggttataatttttctcaatccaaactcatctttctca |
70 |
Q |
| |
|
||||||||| ||||| |||||| || |||||||||||||||||| |||||||| |
|
|
| T |
35056008 |
atgaaatcaggaaaagtggttatcatctttctcaatccaaactcagctttctca |
35056061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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