View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_high_22 (Length: 347)
Name: NF3164_high_22
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 26073104 - 26072764
Alignment:
| Q |
1 |
ccacatatttaatgttggaggtagcttctaaatatgaagaggcattcaaccgcttggagggtgaagatccttcatatgtgtctgaacttgaggtcgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073104 |
ccacatatttaatgttggaggtagcttctaaatatgaagaggcattcaaccgcttggagggtgaagatccttcatatgtgtctgaacttgaggtcgtagg |
26073005 |
T |
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| Q |
101 |
aggaactccaactgtgtatgattggaaccgtgcccgtgtgtttatcaattttctgaagatattttatgatgctaccctaactttttcctcttctttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073004 |
aggaactccaactgtgtatgattggaaccgtgcccgtgtgtttatcaattttctgaagatattttatgatgctaccctaactttttcctcttctttacat |
26072905 |
T |
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| Q |
201 |
gtaagtgctaactgtttctttagaaagtcggtgaaaattcatactgtgttgtcatcatggattcaaagtgaagatgttgtgttgaaaaatatggcattaa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | |
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| T |
26072904 |
gtaagtgctaactgtttctttagaaagttggtgaagattcatactgcactgtcatcatggattcaaggtgaagatgttgtgttgaaaaacatggcattga |
26072805 |
T |
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| Q |
301 |
ctaggaaaacgaaatttgaaaaatattggagtgatgagaat |
341 |
Q |
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||| |||| | ||||||||||| |||||||||||||||||| |
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| T |
26072804 |
ctatgaaagctaaatttgaaaagtattggagtgatgagaat |
26072764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 44271881 - 44271541
Alignment:
| Q |
1 |
ccacatatttaatgttggaggtagcttctaaatatgaagaggcattcaaccgcttggagggtgaagatccttcatatgtgtctgaacttgaggtcgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44271881 |
ccacatatttaatgttggaggtagcttctaaatatgaagaggcattcaaccgcttggagggtgaagatccttcatatgtgtctgaacttgaggtcgtagg |
44271782 |
T |
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| Q |
101 |
aggaactccaactgtgtatgattggaaccgtgcccgtgtgtttatcaattttctgaagatattttatgatgctaccctaactttttcctcttctttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44271781 |
aggaactccaactgtgtatgattggaaccgtgcccgtgtgtttatcaattttctgaagatattttatgatgctaccctaactttttcctcttctttacat |
44271682 |
T |
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| Q |
201 |
gtaagtgctaactgtttctttagaaagtcggtgaaaattcatactgtgttgtcatcatggattcaaagtgaagatgttgtgttgaaaaatatggcattaa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | |
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| T |
44271681 |
gtaagtgctaactgtttctttagaaagttggtgaagattcatactgcactgtcatcatggattcaaggtgaagatgttgtgttgaaaaacatggcattga |
44271582 |
T |
|
| Q |
301 |
ctaggaaaacgaaatttgaaaaatattggagtgatgagaat |
341 |
Q |
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||| |||| | ||||||||||| |||||||||||||||||| |
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| T |
44271581 |
ctatgaaagctaaatttgaaaagtattggagtgatgagaat |
44271541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 1670598 - 1670938
Alignment:
| Q |
1 |
ccacatatttaatgttggaggtagcttctaaatatgaagaggcattcaaccgcttggagggtgaagatccttcatatgtgtctgaacttgaggtcgtagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670598 |
ccacatatttaatgttggaggtagcttctaaatatgaagaggcattcaaccgcttggagggtgaagatccttcatatgtgtctgaacttgaggtcgtagg |
1670697 |
T |
|
| Q |
101 |
aggaactccaactgtgtatgattggaaccgtgcccgtgtgtttatcaattttctgaagatattttatgatgctaccctaactttttcctcttctttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670698 |
aggaactccaactgtgtatgattggaaccgtgcccgtgtgtttatcaattttctgaagatattttatgatgctaccctaactttttcctcttctttacat |
1670797 |
T |
|
| Q |
201 |
gtaagtgctaactgtttctttagaaagtcggtgaaaattcatactgtgttgtcatcatggattcaaagtgaagatgttgtgttgaaaaatatggcattaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | |
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| T |
1670798 |
ataagtgctaactgtttctttagaaagttggtgaagattcatactgcactgtcatcatggattcaaggtgaagatgttgtgttgaaaaacatggcattga |
1670897 |
T |
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| Q |
301 |
ctaggaaaacgaaatttgaaaaatattggagtgatgagaat |
341 |
Q |
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||| |||| | ||||||||||| |||||||||||||||||| |
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| T |
1670898 |
ctatgaaagctaaatttgaaaagtattggagtgatgagaat |
1670938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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