View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_high_24 (Length: 341)
Name: NF3164_high_24
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 3783408 - 3783708
Alignment:
| Q |
18 |
gttttgtgatgatgaagatcaagttattatgtggtggctcaatgatgaaggatttaacaagtgattagtttgtcgtcacgtaatgaaagtacaataatgt |
117 |
Q |
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| T |
3783408 |
gttttgtgatgatgaagatcaagttattatgtggtggctcaatgatgaaggatttaacaagtgattagtttgtcgtcacgtaatgaaagtacaataatgt |
3783507 |
T |
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| Q |
118 |
ttgtatccatagagaatgcgtgatttcaacaatactactacgcttataattaaaatgtgcaaaaataagggctgcacttgacaagttagactttgcttca |
217 |
Q |
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| T |
3783508 |
ttgtatccatagagattgcgtgatttcaacaatactactacgcttatgattaaaatgtgcaaaaataagggctgcacttgacaagttaaattttgcttca |
3783607 |
T |
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| Q |
218 |
tttattgttcatttatgagagagataaatacatataatagtttagtgaaatccattagtagaacccactaaatcactaatctatttcttatgacagctta |
317 |
Q |
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| T |
3783608 |
tttattgttcatttatgaaagagattgataaatattatagtttagtgaaatccatcggtggaatccactaaatcactaa------tcttatgacagctta |
3783701 |
T |
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| Q |
318 |
acgagat |
324 |
Q |
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| T |
3783702 |
acgagat |
3783708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 34453959 - 34454023
Alignment:
| Q |
207 |
actttgcttcatttattgttcatttatgagagagataaatacatataatagtttagtgaaatcca |
271 |
Q |
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| T |
34453959 |
actttgctctatttattgtctatttataagagagataaacacaaataataatttagtgagatcca |
34454023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 32835131 - 32835170
Alignment:
| Q |
217 |
atttattgttcatttatgagagagataaatacatataata |
256 |
Q |
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| T |
32835131 |
atttattgttcatttatgagagagatagatacatgtaata |
32835170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 16875145 - 16875109
Alignment:
| Q |
207 |
actttgcttcatttattgttcatttatgagagagata |
243 |
Q |
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| T |
16875145 |
actttgctccatttattgtccatttatgagagagata |
16875109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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