View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_high_28 (Length: 288)
Name: NF3164_high_28
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 4615248 - 4614986
Alignment:
| Q |
10 |
acatcatcaatttgggttcaaataaatagttcgcaaaactaaacaagaatacacataacatgagatatcagaaaacaacgcgaaactgcggcgcgtttga |
109 |
Q |
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| T |
4615248 |
acatcatcaatttcggttcaaataaatagttcgcaaaactaaacaagaatacacataacatgagatatcagaaaacaacgcgaaactgcggcgcgtttga |
4615149 |
T |
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| Q |
110 |
ctcaaccgccggtaggatctcccaacggcaaggctcaagatcttcagaaactggacaataaccggcaagagtaaccttatcgttgctcgcagcaaccgaa |
209 |
Q |
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| T |
4615148 |
ctcaaccgccggtaggatctcccaacggcaaggctcaagatcttcagaaactggacaataaccggcaagagtaaccttatcgttgctcgcagcaaccgaa |
4615049 |
T |
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| Q |
210 |
ccaaactcgaaaactgaaacactcgcgttcttaggtcgtttaacctccactgcaccgttcatc |
272 |
Q |
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| T |
4615048 |
ccaaactcgaaaactgaaacactcgcgttcttaggtcgtttaacctccactgcaccgttcatc |
4614986 |
T |
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