View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_high_31 (Length: 261)
Name: NF3164_high_31
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_31 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 261
Target Start/End: Original strand, 4270154 - 4270380
Alignment:
| Q |
35 |
taataaaattaacattacccttttaatgccttccactgaatctcaatcctcacatctttaattccttccattcattcatatcttccatacttgtggtgnn |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270154 |
taataaaattaacattacccttttaatgccttccactgaatctcaatcctcacatctttaattccttccattcattcatatcttccatacttgtggtgtt |
4270253 |
T |
|
| Q |
135 |
nnnnnncctatcataacattcaatctgtcgttttctttcaaagttgtgtggcatattcaccaactacctacccttttccaccactagatctaaaaaataa |
234 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270254 |
ttttttcctatgataatattcaatctgtcgttttctttcaaagttgtgtggcatattcaccaactacctacccttttccaccactagatctaaaaaataa |
4270353 |
T |
|
| Q |
235 |
atcttcgatctcaccccacaacaatac |
261 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4270354 |
atcttcgatctcaccccacaacaatac |
4270380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University