View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_high_33 (Length: 254)
Name: NF3164_high_33
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 42247094 - 42247310
Alignment:
| Q |
38 |
tcctatatatcagatcggacaccggagatagttaataatcggctcgtggaaagtcaactctactacagatactactaattagtttttagtttggaaccta |
137 |
Q |
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| T |
42247094 |
tcctatatatcagaccggacaccggaggtagttagtaatcggctcgtggaaagtcaactctactacagatattactaattaatttttagtttggaaccta |
42247193 |
T |
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| Q |
138 |
tagnnnnnnnnnnnnnnnnnnnnncaatcttacaaagagcaactcacaaattagcacttgacttgtgtgttacactcacactagctagctagtttattct |
237 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42247194 |
tagaaaccaaaaacaaaacaaaaccaatcttacaaagagcaactcacaaattagcacttgacttgtgtgttacactcacactagctagctagtttattct |
42247293 |
T |
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| Q |
238 |
atttggttattctcggt |
254 |
Q |
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|||||||||||||||| |
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| T |
42247294 |
gtttggttattctcggt |
42247310 |
T |
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